# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.37e-32 c.107.1.1 68027 1i74A 309 2.36e-31 c.107.1.1 61867 2eb0A 307 4.33e-26 1wpnA 188 2.91e-22 c.107.1.1 114826 1ir6A 424 5.16e-11 c.107.1.2 71342 2qb7A 397 1.39e-09 1yt8A 539 1.466 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2q28A 564 1.772 2djiA 590 2.664 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2ez9A 603 2.669 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2q71A 356 2.890 2oq1A 254 3.515 d.93.1.1,d.93.1.1 139220,139221 1jpkA 388 3.515 c.1.22.1 67026 1sviA 195 3.756 c.37.1.8 106048 1eejA 216 4.550 c.47.1.9,d.17.3.1 33057,38071 2c31A 568 4.673 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1poxA 585 6.687 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uwcA 261 7.819 c.69.1.17 100101 1r8eA 278 8.926 a.6.1.3,d.60.1.1 104843,104844 1b4aA 149 9.008 a.4.5.3,d.74.2.1 16088,39721 1puiA 210 9.046 c.37.1.8 88292 1a81A 254 9.262 d.93.1.1,d.93.1.1 40507,40508 2ejaA 338 9.881 1tib 269 12.45 1zcjA 463 12.80 2p97A 201 13.52 2bjhA 260 13.82 1ybhA 590 14.22 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1v8bA 479 14.31 c.2.1.4,c.23.12.3 113564,113565 3bzwA 274 15.32 3brsA 289 16.17 1lfwA 470 16.70 c.56.5.4,d.58.19.1 77942,77943 1ra0A 430 19.90 b.92.1.2,c.1.9.5 111756,111757 2cyaA 364 23.72 1ozhA 566 26.29 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2cxxA 190 29.01 c.37.1.8 131013 1gt6A 269 30.75 c.69.1.17 76342 1fcjA 322 31.79 c.79.1.1 35289 1vmeA 410 32.53 c.23.5.1,d.157.1.3 108893,108894 1th8B 116 32.86 c.13.2.1 106909 2bm8A 236 35.73 c.66.1.50 128771 8abpA 306 37.57 c.93.1.1 35647 1gpjA 404 37.76 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1oywA 523 38.07 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2o35A 105 38.94 1uswA 260 39.54 c.69.1.17 99895 2ihtA 573 40.22 1qz9A 416 43.04 c.67.1.3 96621 1xqwA 293 43.38 2bykB 128 44.13 a.22.1.3 129487 2psdA 318 46.54 1fc4A 401 46.90 c.67.1.4 59760 2p71A 132 47.37 a.39.2.1 139516 1mtzA 293 49.32 c.69.1.7 79467 1efaA 333 50.35 a.35.1.5,c.93.1.1 17106,35691 1oasA 322 52.10 c.79.1.1 35293 1sxjA 511 52.17 a.80.1.1,c.37.1.20 106081,106082 1vmkA 277 53.93 c.56.2.1 113680 1qwgA 251 54.01 c.1.27.1 96473 1b24A 188 62.44 d.95.2.1,d.95.2.1 40573,40574 1xwfA 431 63.96 c.2.1.4,c.23.12.3 122392,122393 2fv2A 268 66.52 3cogA 403 67.93 2p5mA 83 69.48 1cg2A 393 70.39 c.56.5.4,d.58.19.1 33844,39360 2jfgA 445 75.44 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1j6uA 469 77.78 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 3bueA 79 78.91 2nw0A 189 79.70 1rkuA 206 81.77 c.108.1.11 97627 1aiaA 396 82.61 c.67.1.1 34306 2fz4A 237 82.72 c.37.1.19 134419 1abaA 87 83.44 c.47.1.1 32760 2z61A 370 85.49 2obdA 476 88.93 1zmaA 118 89.31 c.47.1.1 125354