# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.30e-29 c.107.1.1 68027 1i74A 309 1.12e-28 c.107.1.1 61867 2eb0A 307 7.05e-24 1wpnA 188 1.31e-20 c.107.1.1 114826 1ir6A 424 3.35e-10 c.107.1.2 71342 2qb7A 397 5.23e-09 2q28A 564 2.026 1yt8A 539 2.602 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1jpkA 388 3.749 c.1.22.1 67026 2q71A 356 3.760 2djiA 590 3.929 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2p97A 201 4.366 2c31A 568 4.443 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2ez9A 603 6.414 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1zcjA 463 6.777 1tib 269 7.074 1sviA 195 7.151 c.37.1.8 106048 1uwcA 261 7.199 c.69.1.17 100101 2oq1A 254 7.871 d.93.1.1,d.93.1.1 139220,139221 1v8bA 479 8.023 c.2.1.4,c.23.12.3 113564,113565 1r8eA 278 9.827 a.6.1.3,d.60.1.1 104843,104844 2bjhA 260 9.95 1ra0A 430 10.00 b.92.1.2,c.1.9.5 111756,111757 2ejaA 338 11.14 1eejA 216 11.44 c.47.1.9,d.17.3.1 33057,38071 3brsA 289 13.53 1poxA 585 13.84 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1puiA 210 14.27 c.37.1.8 88292 8abpA 306 15.28 c.93.1.1 35647 3bzwA 274 15.46 1ybhA 590 18.93 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1gt6A 269 20.59 c.69.1.17 76342 1lfwA 470 20.95 c.56.5.4,d.58.19.1 77942,77943 1b4aA 149 23.46 a.4.5.3,d.74.2.1 16088,39721 1a81A 254 24.87 d.93.1.1,d.93.1.1 40507,40508 1qz9A 416 28.99 c.67.1.3 96621 2cyaA 364 31.07 1th8B 116 31.72 c.13.2.1 106909 1uirA 314 31.75 c.66.1.17 99429 1vmeA 410 31.91 c.23.5.1,d.157.1.3 108893,108894 1mtzA 293 32.07 c.69.1.7 79467 1xwfA 431 36.45 c.2.1.4,c.23.12.3 122392,122393 1xqwA 293 37.57 1uswA 260 37.78 c.69.1.17 99895 1oywA 523 39.98 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1gpjA 404 40.84 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2jfgA 445 41.26 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2fz4A 237 41.97 c.37.1.19 134419 2fv2A 268 42.20 1fcjA 322 42.44 c.79.1.1 35289 2o35A 105 42.72 2yyyA 343 43.11 2bm8A 236 43.60 c.66.1.50 128771 8abp 306 46.78 1fc4A 401 51.12 c.67.1.4 59760 2psdA 318 54.49 1oasA 322 58.87 c.79.1.1 35293 2nw0A 189 65.40 1qwgA 251 68.09 c.1.27.1 96473 1qf9A 194 69.14 c.37.1.1 31848 2z61A 370 71.01 2cxxA 190 71.08 c.37.1.8 131013 1efaA 333 71.82 a.35.1.5,c.93.1.1 17106,35691 1c4xA 285 73.76 c.69.1.10 34684 2chgA 226 76.89 1fohA 664 77.15 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1vmkA 277 77.46 c.56.2.1 113680 1cl1A 395 78.38 c.67.1.3 34395 1zmaA 118 80.94 c.47.1.1 125354 1cukA 203 81.29 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2qi2A 347 82.93 1akyA 220 84.21 c.37.1.1,g.41.2.1 31896,45197 2o2iA 300 86.33 2qsfX 171 86.64 2pidA 356 89.31 1j6uA 469 89.70 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 3cogA 403 89.76