# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 7.94e-31 c.107.1.1 68027 1i74A 309 1.34e-29 c.107.1.1 61867 2eb0A 307 2.86e-24 1wpnA 188 6.64e-22 c.107.1.1 114826 1ir6A 424 1.22e-10 c.107.1.2 71342 2qb7A 397 4.57e-09 1sviA 195 0.2968 c.37.1.8 106048 1yt8A 539 1.999 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 3b9pA 297 3.042 1v8bA 479 3.134 c.2.1.4,c.23.12.3 113564,113565 1uwcA 261 3.379 c.69.1.17 100101 1a81A 254 3.434 d.93.1.1,d.93.1.1 40507,40508 1xwiA 322 4.089 2p97A 201 4.253 2oq1A 254 4.454 d.93.1.1,d.93.1.1 139220,139221 2qsfX 171 4.554 1jpkA 388 4.705 c.1.22.1 67026 1puiA 210 5.658 c.37.1.8 88292 2q71A 356 6.298 1r8eA 278 8.373 a.6.1.3,d.60.1.1 104843,104844 2ez9A 603 9.441 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2bjhA 260 9.856 1uswA 260 10.27 c.69.1.17 99895 2q28A 564 10.28 1vmeA 410 10.94 c.23.5.1,d.157.1.3 108893,108894 1xwfA 431 11.19 c.2.1.4,c.23.12.3 122392,122393 2ihtA 573 11.69 2c31A 568 15.16 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2djiA 590 17.63 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1ybhA 590 18.55 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1lgyA 269 19.44 c.69.1.17 34758 1gt6A 269 21.08 c.69.1.17 76342 2psdA 318 21.78 1tib 269 24.31 1hnnA 282 24.32 c.66.1.15 65895 1sjiA 350 28.47 2ipxA 233 29.56 1lfwA 470 32.55 c.56.5.4,d.58.19.1 77942,77943 8abpA 306 32.99 c.93.1.1 35647 1bvwA 360 33.66 c.6.1.1 30668 1rlmA 271 33.90 c.108.1.10 111860 1y89A 238 34.53 1vjgA 218 34.91 c.23.10.6 100810 1wyzA 242 37.25 c.90.1.1 121471 2chgA 226 38.75 1oc7A 364 39.12 c.6.1.1 86794 2yy3A 91 39.50 1eyrA 228 40.60 c.68.1.13 34514 1oywA 523 41.16 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1poxA 585 43.96 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2bvwA 362 44.83 c.6.1.1 30666 1h75A 81 45.18 c.47.1.1 60716 1eziA 228 46.31 c.68.1.13 34512 2ejaA 338 46.69 1t1vA 93 47.03 c.47.1.14 106278 1th8B 116 47.40 c.13.2.1 106909 1rkuA 206 56.44 c.108.1.11 97627 1iz7A 295 59.89 c.69.1.8 76982 1uirA 314 60.22 c.66.1.17 99429 1jeoA 180 62.38 c.80.1.3 66611 1ep3B 262 63.00 b.43.4.2,c.25.1.3 25664,31554 2gcuA 245 64.07 2d5cA 263 64.73 1w5fA 353 66.12 c.32.1.1,d.79.2.1 114247,114248 1eejA 216 66.91 c.47.1.9,d.17.3.1 33057,38071 1fcjA 322 67.11 c.79.1.1 35289 3bgeA 201 67.98 3c57A 95 68.81 1p15A 253 72.87 c.45.1.2 93894 2dstA 131 73.53 1aazA 87 73.92 c.47.1.1 32761 2e85A 159 75.58 1j6uA 469 76.12 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1bn6A 294 77.64 c.69.1.8 34678 1ydnA 295 78.94 1dv0A 47 79.55 a.5.2.1 16289 2hhjA 267 80.99 c.60.1.1 136497 1m6iA 493 82.27 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2uz1A 563 82.51 2cxxA 190 83.08 c.37.1.8 131013 2bwjA 199 83.15 1ma3A 253 86.24 c.31.1.5 78883 1yzxA 226 86.30 1zkjA 359 86.98 1fukA 165 87.00 c.37.1.19 32409 2jbmA 299 87.46