# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.96e-27 c.107.1.1 68027 1ir6A 424 1.44e-25 c.107.1.2 71342 1i74A 309 1.56e-25 c.107.1.1 61867 2eb0A 307 2.05e-24 2qb7A 397 2.24e-18 1wpnA 188 2.23e-16 c.107.1.1 114826 3cs3A 277 1.403 2rgyA 290 1.869 2fepA 289 1.989 1jeoA 180 3.327 c.80.1.3 66611 2z9wA 392 3.949 3bblA 287 4.426 2oq2A 261 4.992 3c3kA 285 5.029 2driA 271 5.486 c.93.1.1 35637 1qs0B 338 5.549 c.36.1.7,c.48.1.2 31830,33103 1b8gA 429 5.579 c.67.1.4 34499 1vljA 407 6.266 e.22.1.2 108832 2iksA 293 6.472 1ynuA 473 6.788 c.67.1.4 123762 1qmgA 524 7.502 a.100.1.2,c.2.1.6 18785,30182 2gt1A 326 7.525 1d2fA 390 8.226 c.67.1.3 34411 1pjqA 457 8.545 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dri 271 8.573 2jbwA 386 8.786 2qu7A 288 10.03 1gudA 288 10.76 c.93.1.1 83326 1rrmA 386 11.33 e.22.1.2 105081 1rzuA 485 11.60 c.87.1.8 105140 2hufA 393 11.91 1surA 215 12.15 c.26.2.2 31620 2p1zA 180 12.92 2dr1A 386 13.41 3brsA 289 14.38 1m32A 366 15.90 c.67.1.3 78508 1vjoA 393 16.02 c.67.1.3 100827 1m3sA 186 16.53 c.80.1.3 78573 1iugA 352 16.69 c.67.1.3 90699 2o20A 332 16.99 2q28A 564 17.10 1zunA 325 17.13 c.26.2.2 125676 1dbqA 289 17.16 c.93.1.1 35666 1wuuA 399 17.53 d.14.1.5,d.58.26.7 114900,114901 1x9iA 302 17.82 c.80.1.1 114997 2pocA 367 17.85 1j5xA 342 17.92 c.80.1.1 71591 1vimA 200 19.14 c.80.1.3 100758 1bykA 255 19.19 c.93.1.1 35706 1k2yX 463 19.37 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1m22A 503 19.53 c.117.1.1 78464 1a04A 215 19.53 a.4.6.2,c.23.1.1 16234,31089 2fn9A 290 19.76 3brqA 296 21.30 2jfuA 291 21.68 2j6iA 364 21.94 2gs8A 317 22.18 1sc6A 404 22.69 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2ahrA 259 22.92 a.100.1.10,c.2.1.6 126775,126776 2a3nA 355 23.10 2ioyA 283 23.19 2dejA 350 23.29 2dplA 308 23.64 1gpjA 404 24.14 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3beoA 375 24.33 2h0aA 276 24.37 2df8A 325 26.24 1iirA 415 26.62 c.87.1.5 62453 1jftA 340 27.22 a.35.1.5,c.93.1.1 66652,66653 1vpdA 299 27.24 a.100.1.1,c.2.1.6 113951,113952 1qz9A 416 27.67 c.67.1.3 96621 1q0qA 406 28.25 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1xngA 268 29.05 c.26.2.1 122186 2z06A 252 29.81 1bw0A 416 30.14 c.67.1.1 34385 2uzhA 165 30.94 1p3wA 404 31.63 c.67.1.3 87752 1p5dX 463 31.77 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1tibA 269 32.78 c.69.1.17 34738 1wqaA 455 32.95 1kkhA 317 33.02 d.14.1.5,d.58.26.3 72645,72646 1gca 309 33.29 2pk3A 321 34.17 1eg5A 384 35.58 c.67.1.3 34429 2fvyA 309 35.63 c.93.1.1 134227 2amlA 373 35.65 2bwnA 401 35.70 c.67.1.4 129368 2e7jA 371 35.89 3ctpA 330 39.82 1t3gA 159 40.04 1tlfA 301 40.05 c.93.1.1 35687 3bilA 348 40.56 2r2nA 425 41.68 2qjcA 262 42.34 1pieA 419 42.54 d.14.1.5,d.58.26.7 94706,94707 1td2A 287 42.80 c.72.1.5 106765 2fssA 365 42.93 1moq 368 43.82 1c7nA 399 44.42 c.67.1.3 34413 2d59A 144 45.35 c.2.1.8 131266 2oi2A 292 45.97 1iukA 140 45.98 c.2.1.8 83712 3cogA 403 47.02 1wxiA 275 47.37 c.26.2.1 121400 1sur 215 47.66 1eluA 390 47.72 c.67.1.3 34434 1gdhA 320 47.86 c.2.1.4,c.23.12.1 30095,31355 1j0aA 325 48.68 c.79.1.1 83871 2yrrA 353 48.98 2iyaA 424 50.44 1fwkA 296 50.57 d.14.1.5,d.58.26.1 37576,39398 1wg8A 285 50.74 a.60.13.1,c.66.1.23 114605,114606 1moqA 368 51.77 c.80.1.1 35302 1pswA 348 51.78 c.87.1.7 88287 1vdmA 153 52.70 c.61.1.1 119994 2cb0A 333 52.90 2v3gA 283 54.12 1y37A 304 54.14 1qgoA 264 54.41 c.92.1.2 35596 2p67A 341 54.53 1gdeA 389 55.04 c.67.1.1 60456 2i2wA 212 56.53 2ay1A 394 56.57 c.67.1.1 34357 1ujqA 305 57.73 c.1.12.7 99463 1f0kA 364 57.89 c.87.1.2 35465 8abp 306 58.26 2qwwA 154 58.80 1nriA 306 58.98 c.80.1.3 86123 1owlA 484 60.31 a.99.1.1,c.28.1.1 93647,93648 2dwuA 276 61.61 3bdvA 191 62.01 2pg9A 337 62.20 1d4aA 273 62.40 c.23.5.3 31219 2yvaA 196 62.63 1y81A 138 62.72 c.2.1.8 122731 1yqgA 263 63.79 1w85A 368 64.13 c.36.1.11 114335 1uk8A 282 65.83 c.69.1.10 107907 1zclA 180 67.57 1gt6A 269 67.85 c.69.1.17 76342 2qjwA 176 69.86 1bjwA 382 70.78 c.67.1.1 34349 1umdA 367 70.93 c.36.1.11 99599 3caiA 406 71.24 2rjoA 332 71.36 2dy0A 190 71.49 1lc5A 364 72.48 c.67.1.1 73827 1poxA 585 72.76 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1m6sA 347 72.88 c.67.1.1 78701 1s3jA 155 73.51 a.4.5.28 98437 1d3gA 367 74.04 c.1.4.1 28600 2c31A 568 75.48 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2r0bA 154 75.80 2o4cA 380 75.93 2q0xA 335 77.01 1r7mA 235 77.35 d.95.2.1,d.95.2.1 111713,111714 1u5kA 244 77.45 b.40.4.13,g.45.1.2 113038,113039 1wd7A 261 78.33 c.113.1.1 114526 1q7eA 428 78.44 c.123.1.1 96035 1mgpA 313 78.61 c.119.1.1 79098 1c4xA 285 80.61 c.69.1.10 34684 1jyeA 349 80.72 c.93.1.1 67455 2hfsA 332 81.16 2fuvA 549 81.23 1cv2A 296 82.09 c.69.1.8 34680 2o7cA 398 84.24 1ahxA 396 84.49 c.67.1.1 34293 1qtrA 317 85.09 c.69.1.7 34660 2bfdA 400 85.69 1j1iA 296 87.75 c.69.1.10 83977 1a76 326 88.07 1qg8A 255 88.25 c.68.1.1 34505 1jvsA 400 88.54 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2a2cA 478 89.54