# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.05e-23 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 8.28e-23 2pbxA 203 8.46e-23 3bhqA 211 8.93e-23 2id6A 202 1.01e-22 1rktA 205 1.30e-22 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 1.40e-22 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.83e-22 1zkgA 212 2.33e-22 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 2.81e-22 2ibdA 204 3.03e-22 1z77A 200 3.79e-22 a.4.1.9,a.121.1.1 124588,124589 2g7sA 194 4.17e-22 a.4.1.9,a.121.1.1 134737,134738 2uxuA 210 4.93e-22 2hyjA 200 5.07e-22 2iekA 200 5.14e-22 3ccyA 203 5.73e-22 3cwrA 208 8.27e-22 2i10A 202 8.37e-22 a.4.1.9,a.121.1.1 136960,136961 3crjA 199 8.47e-22 3bcgA 215 8.98e-22 2fx0A 201 1.48e-21 a.4.1.9,a.121.1.1 134269,134270 1t56A 216 1.67e-21 a.4.1.9,a.121.1.1 106428,106429 2jj7A 186 1.74e-21 1qvtA 194 2.32e-21 a.4.1.9,a.121.1.1 104602,104603 2hytA 197 2.46e-21 2qcoA 210 2.60e-21 2g3bA 208 2.90e-21 a.4.1.9,a.121.1.1 134558,134559 2fq4A 192 4.25e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 4.95e-21 1jt6A 188 5.87e-21 a.4.1.9,a.121.1.1 67247,67248 2iaiA 230 6.10e-21 1ui5A 215 6.23e-21 a.4.1.9,a.121.1.1 107856,107857 2genA 197 6.85e-21 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 7.93e-21 2fbqA 235 1.29e-20 a.4.1.9,a.121.1.1 133256,133257 2raeA 207 1.39e-20 2nx4A 194 1.65e-20 3cdlA 203 2.54e-20 2of7A 260 3.74e-20 3b81A 203 4.24e-20 3c2bA 221 4.37e-20 2o7tA 199 5.65e-20 2zb9A 214 6.25e-20 2q24A 194 7.83e-20 2dg8A 193 9.26e-20 2np5A 203 9.48e-20 a.4.1.9,a.121.1.1 138424,138425 3colA 196 1.09e-19 2yveA 185 1.24e-19 3cjdA 198 1.26e-19 2hkuA 215 1.44e-19 2eh3A 179 1.45e-19 2iu5A 195 2.04e-19 2fd5A 180 2.12e-19 a.4.1.9,a.121.1.1 133291,133292 2qibA 231 2.98e-19 2o7oA 207 3.01e-19 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 3.70e-19 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 5.48e-19 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 5.57e-19 2rekA 199 6.76e-19 3bniA 229 7.34e-19 2guhA 214 9.52e-19 3bqyA 209 1.33e-18 1v7bA 185 1.69e-18 a.4.1.9,a.121.1.1 119861,119862 1a6i 217 2.28e-18 1t33A 224 2.37e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.73e-18 a.4.1.9,a.121.1.1 125177,125178 2vprA 207 4.45e-18 2qwtA 196 5.50e-18 2qkoA 215 9.21e-18 2oi8A 216 1.64e-17 2gfnA 209 3.55e-17 a.4.1.9,a.121.1.1 135101,135102 2zcmA 192 3.84e-17 1z0xA 220 9.25e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 8.80e-16 2g7lA 243 1.04e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 1.32e-15 2optA 234 1.43e-15 2hxoA 237 2.89e-15 2id3A 225 2.98e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.24e-11 a.4.1.9,a.121.1.1 134732,134733 6paxA 133 1.241 a.4.1.5,a.4.1.5 64758,64759 2jn6A 97 1.291 2ev0A 142 1.311 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.504 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 1.669 1c0wA 225 1.770 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3bbyA 215 1.987 2bnmA 198 2.050 a.35.1.3,b.82.1.10 128835,128836 1hlvA 131 2.368 a.4.1.7,a.4.1.7 65854,65855 1pdnC 128 2.718 a.4.1.5 16047 2oxoA 103 3.180 1lccA 51 3.387 a.35.1.5 17110 1xcbA 211 4.082 a.4.5.38,c.2.1.12 109552,109553 1cjgA 62 4.673 a.35.1.5 17112 2hpkA 208 4.770 2bjcA 62 4.854 a.35.1.5 128620 3b7hA 78 4.977 2pjpA 121 5.390 1gwcA 230 6.356 a.45.1.1,c.47.1.5 70660,70661 1s7oA 113 9.596 a.4.13.3 105354 1a5t 334 10.00 1on2A 142 10.08 a.4.5.24,a.76.1.1 87103,87104 1bi0 226 10.19 1gulA 222 10.22 a.45.1.1,c.47.1.5 17675,32969 3bs3A 76 11.00 2qq9A 226 11.48 2o3fA 111 12.06 1zr5A 214 16.28 c.50.1.2 125525 1utxA 66 16.37 a.35.1.3 108034 1fseA 74 17.27 a.4.6.2 60000 1jkoC 52 18.36 a.4.1.2 66809 2dtrA 226 18.93 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1jj2U 70 21.52 a.2.2.1 63106 1k0dA 260 23.82 a.45.1.1,c.47.1.5 67930,67931 1zljA 78 24.02 2auwA 170 24.11 a.35.1.10,d.331.1.1 127339,127340 2ictA 94 24.37 1tadA 324 24.79 a.66.1.1,c.37.1.8 18194,32077 1f3aA 222 26.06 a.45.1.1,c.47.1.5 17701,32995 2aelA 374 26.64 1je8A 82 29.12 a.4.6.2 77108 1v2aA 210 29.23 a.45.1.1,c.47.1.5 100263,100264 3bzcA 785 29.66 1b0nA 111 30.00 a.34.1.1,a.35.1.3 17001,17064 1r69A 69 30.20 a.35.1.2 17028 2cro 71 30.93 2croA 71 31.30 a.35.1.2 17038 1rzsA 61 32.88 a.35.1.2 105139 1neqA 74 33.18 a.35.1.2 17063 1vf1A 229 33.45 1u8bA 133 34.22 1k78A 149 34.91 a.4.1.5,a.4.1.5 68255,68256 2blfA 373 34.95 2ebyA 113 35.17 1s69A 124 35.73 a.1.1.1 105305 1w07A 659 37.43 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1efaA 333 37.90 a.35.1.5,c.93.1.1 17106,35691 1ehiA 377 38.14 c.30.1.2,d.142.1.1 31716,41484 1l7vA 326 38.26 f.22.1.1 73672 1ret 43 38.68 2scpA 174 38.89 a.39.1.5 17256 1k3yA 221 39.32 a.45.1.1,c.47.1.5 77245,77246 1p4wA 99 39.37 a.4.6.2 87783 1f5tA 121 40.40 a.4.5.24,a.76.1.1 16203,18409 1oqyA 368 40.55 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1y7yA 74 40.94 a.35.1.3 122729 2e60A 101 41.03 1y9qA 192 42.49 a.35.1.8,b.82.1.15 116592,116593 1ngkA 128 42.98 a.1.1.1 85673 2b5aA 77 43.27 a.35.1.3 127882 2q7eA 291 45.66 1mmoB 384 47.29 a.25.1.2 16768 1y0uA 96 47.98 a.4.5.5 116310 1iqpA 327 48.22 a.80.1.1,c.37.1.20 62649,62650 2a9dA 372 48.52 b.1.18.6,d.176.1.1 126431,126432 1qpzA 340 48.94 a.35.1.5,c.93.1.1 17097,35673 1wpkA 146 49.03 2h12A 436 50.09 1jftA 340 51.09 a.35.1.5,c.93.1.1 66652,66653 1dlyA 164 51.49 a.1.1.1 14983 1wsuA 124 51.80 a.4.5.35,a.4.5.35 121245,121246 3bct 457 52.15 2on5A 206 52.81 2q7wA 396 53.82 1ho8A 480 56.18 a.118.1.9 61107 1vz0A 230 56.97 a.4.14.1,d.268.1.1 108929,108930 1hg5A 289 57.73 a.7.8.2,a.118.9.3 90360,90361 2f4mB 61 59.36 a.189.1.1 132931 1r69 69 59.85 1b1bA 140 59.89 a.4.5.24,a.76.1.1 16215,18421 1m0uA 249 60.40 a.45.1.1,c.47.1.5 78359,78360 2r1jL 68 60.90 3c8yA 574 61.06 1lea 84 62.63 3cecA 104 62.89 2f6rA 281 67.68 1fw1A 216 68.26 a.45.1.1,c.47.1.5 60051,60052 2h09A 155 69.42 1vpwA 340 69.57 a.35.1.5,c.93.1.1 17087,35680 1wdvA 152 69.60 d.116.1.1 114539 2de3A 365 69.83 1jlwA 219 70.97 a.45.1.1,c.47.1.5 71741,71742 1sedA 117 71.49 a.219.1.1 105449 1g2hA 61 72.10 a.4.1.12 60224 2vd8A 391 74.36 3bq3A 270 74.50 2g1kA 176 74.67 c.37.1.2 134519 1jr3A 373 75.32 a.80.1.1,c.37.1.20 63245,63246 1a0eA 443 75.51 c.1.15.3 29537 1bl0A 129 75.77 a.4.1.8,a.4.1.8 16053,16054 1fx7A 230 76.70 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cbuA 214 78.33 1aw9A 216 78.55 a.45.1.1,c.47.1.5 17736,33030 2ivmA 150 78.65 1yn9A 169 79.16 2fbkA 181 79.39 a.4.5.28 133247 2yxoA 267 80.86 1w96A 554 81.40 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1r1uA 106 81.53 a.4.5.5 104771 2a8lA 420 82.13 2gsqA 202 83.07 a.45.1.1,c.47.1.5 17715,33009 1k2xA 177 83.76 d.153.1.5 90929 2qz8A 149 84.03 1anf 370 86.67 2fjrA 189 87.62 1sfxA 109 87.77 a.4.5.50 105505