# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 5.49e-22 1vi0A 206 9.22e-22 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 1.21e-21 a.4.1.9,a.121.1.1 88017,88018 3bhqA 211 1.53e-21 1rktA 205 1.67e-21 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 1.74e-21 2g7sA 194 1.94e-21 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 2.31e-21 3bruA 222 3.64e-21 1zkgA 212 3.69e-21 a.4.1.9,a.121.1.1 125194,125195 2ibdA 204 5.34e-21 3bcgA 215 5.83e-21 2rasA 212 6.05e-21 1z77A 200 6.94e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 7.77e-21 2iekA 200 8.00e-21 2hyjA 200 8.14e-21 2uxuA 210 8.33e-21 3crjA 199 1.01e-20 1t56A 216 1.03e-20 a.4.1.9,a.121.1.1 106428,106429 2i10A 202 1.21e-20 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 1.36e-20 a.4.1.9,a.121.1.1 134558,134559 3cwrA 208 1.37e-20 2qcoA 210 1.50e-20 2jj7A 186 2.60e-20 2genA 197 3.31e-20 a.4.1.9,a.121.1.1 135062,135063 2fx0A 201 3.42e-20 a.4.1.9,a.121.1.1 134269,134270 2hytA 197 3.93e-20 1qvtA 194 4.53e-20 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 4.65e-20 2fq4A 192 5.81e-20 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 8.03e-20 1jt6A 188 1.04e-19 a.4.1.9,a.121.1.1 67247,67248 2iaiA 230 1.17e-19 1ui5A 215 1.31e-19 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 1.42e-19 a.4.1.9,a.121.1.1 133256,133257 2raeA 207 2.06e-19 3cdlA 203 2.10e-19 2nx4A 194 2.30e-19 2of7A 260 3.58e-19 3c2bA 221 3.68e-19 2o7tA 199 4.39e-19 3b81A 203 5.78e-19 2zb9A 214 6.90e-19 2hkuA 215 7.87e-19 2o7oA 207 7.92e-19 a.4.1.9,a.121.1.1 138930,138931 2np5A 203 1.06e-18 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 1.27e-18 2q24A 194 1.30e-18 2eh3A 179 1.50e-18 2yveA 185 1.63e-18 3cjdA 198 2.15e-18 3colA 196 2.19e-18 2iu5A 195 2.86e-18 2qibA 231 3.11e-18 3bqyA 209 3.31e-18 2fd5A 180 3.35e-18 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 5.43e-18 1sgmA 191 5.52e-18 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 7.14e-18 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 9.01e-18 3bniA 229 1.14e-17 1v7bA 185 1.36e-17 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 1.53e-17 2qwtA 196 1.82e-17 1a6i 217 2.21e-17 1t33A 224 2.52e-17 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 2.80e-17 1zk8A 183 4.99e-17 a.4.1.9,a.121.1.1 125177,125178 2qkoA 215 1.31e-16 2gfnA 209 2.69e-16 a.4.1.9,a.121.1.1 135101,135102 2zcmA 192 3.05e-16 2oi8A 216 3.60e-16 1z0xA 220 7.31e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 6.77e-15 2g7lA 243 1.03e-14 a.4.1.9,a.121.1.1 134734,134735 2tct 207 1.07e-14 2optA 234 1.60e-14 2id3A 225 2.15e-14 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 3.62e-14 2g7gA 213 9.85e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 2.354 a.4.5.24,a.76.1.1 132413,132414 1a5t 334 2.842 1c0wA 225 3.144 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2jn6A 97 3.236 2oxoA 103 3.254 2dt5A 211 3.532 a.4.5.38,c.2.1.12 131708,131709 1hlvA 131 4.216 a.4.1.7,a.4.1.7 65854,65855 2pg4A 95 4.283 1lccA 51 4.503 a.35.1.5 17110 2bnmA 198 4.590 a.35.1.3,b.82.1.10 128835,128836 3bbyA 215 6.690 1gulA 222 6.854 a.45.1.1,c.47.1.5 17675,32969 1hqvA 191 6.877 a.39.1.8 61160 1gwcA 230 6.887 a.45.1.1,c.47.1.5 70660,70661 2qq9A 226 8.077 1cjgA 62 8.797 a.35.1.5 17112 2bjcA 62 9.127 a.35.1.5 128620 3b7hA 78 10.29 1el4A 195 10.92 a.39.1.5 59453 2pjpA 121 11.71 1on2A 142 12.84 a.4.5.24,a.76.1.1 87103,87104 2bnxA 386 13.16 a.118.1.23 128861 1bi0 226 13.95 1zy9A 564 18.38 b.30.5.11,c.1.8.13 125813,125814 1d0cA 444 19.22 d.174.1.1 64769 1c4zA 358 19.23 d.148.1.1 41766 2ez6A 221 19.39 a.149.1.1,d.50.1.1 132616,132617 2z1dA 372 19.89 1hr6A 475 19.98 d.185.1.1,d.185.1.1 61164,61165 1jj2U 70 20.51 a.2.2.1 63106 1m0uA 249 21.21 a.45.1.1,c.47.1.5 78359,78360 1cezA 883 22.30 e.8.1.3 43110 1f3aA 222 22.88 a.45.1.1,c.47.1.5 17701,32995 1ngkA 128 23.04 a.1.1.1 85673 1q06A 135 23.65 a.6.1.3 95493 2o3fA 111 24.50 1k3yA 221 24.70 a.45.1.1,c.47.1.5 77245,77246 6paxA 133 25.33 a.4.1.5,a.4.1.5 64758,64759 2yr1A 257 25.65 1cwyA 500 25.76 c.1.8.1 28789 2aelA 374 25.88 1w07A 659 26.51 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1jkoC 52 27.24 a.4.1.2 66809 2oixA 186 27.31 1alvA 173 27.72 a.39.1.8 17370 2scpA 174 27.72 a.39.1.5 17256 1fseA 74 29.52 a.4.6.2 60000 3bs3A 76 30.07 1s7oA 113 30.17 a.4.13.3 105354 1k0dA 260 32.22 a.45.1.1,c.47.1.5 67930,67931 1hg5A 289 32.54 a.7.8.2,a.118.9.3 90360,90361 2h09A 155 33.67 3c0iA 351 34.55 2dtrA 226 34.90 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ho8A 480 35.07 a.118.1.9 61107 1u8bA 133 36.13 1l1zA 274 36.29 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2on5A 206 36.45 3bzcA 785 36.46 1utxA 66 37.97 a.35.1.3 108034 1mmoB 384 38.05 a.25.1.2 16768 1zljA 78 40.33 2q09A 416 40.86 1x2gA 337 41.00 1wsuA 124 41.27 a.4.5.35,a.4.5.35 121245,121246 1vf1A 229 41.92 1nstA 325 41.93 c.37.1.5 31951 1l2uA 245 42.14 c.1.2.3 73516 1jlwA 219 42.64 a.45.1.1,c.47.1.5 71741,71742 2g3vA 208 42.97 1jeqB 565 44.87 b.131.1.2,c.62.1.4 90368,90369 2auwA 170 45.17 a.35.1.10,d.331.1.1 127339,127340 1l7vA 326 45.22 f.22.1.1 73672 2ictA 94 45.22 2pexA 153 45.75 1v2aA 210 45.86 a.45.1.1,c.47.1.5 100263,100264 1ceoA 343 47.81 c.1.8.3 28808 2bkmA 128 48.15 2eutA 294 48.35 a.93.1.1 132407 1zarA 282 48.88 a.4.5.56,d.144.1.9 124843,124844 1f5tA 121 48.89 a.4.5.24,a.76.1.1 16203,18409 2dg6A 222 49.33 2yy7A 312 49.53 1eovA 487 49.92 b.40.4.1,d.104.1.1 25239,40760 1vh0A 161 50.33 c.116.1.3 100626 1b0nA 111 50.62 a.34.1.1,a.35.1.3 17001,17064 1sedA 117 50.88 a.219.1.1 105449 2b81A 323 51.00 1tadA 324 52.17 a.66.1.1,c.37.1.8 18194,32077 1neqA 74 52.83 a.35.1.2 17063 2gsqA 202 53.51 a.45.1.1,c.47.1.5 17715,33009 1s69A 124 53.53 a.1.1.1 105305 1qpzA 340 54.49 a.35.1.5,c.93.1.1 17097,35673 2fstX 367 54.97 1dlyA 164 56.54 a.1.1.1 14983 2cro 71 57.39 2hoeA 380 58.59 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3bct 457 59.76 1w79A 489 59.89 e.3.1.3 120680 2croA 71 60.58 a.35.1.2 17038 1r69A 69 61.54 a.35.1.2 17028 1y0uA 96 61.62 a.4.5.5 116310 1pdnC 128 62.59 a.4.1.5 16047 1rypB 250 62.64 d.153.1.4 41933 3bkhA 268 64.01 1d2rA 326 64.41 c.26.1.1 31572 1rzsA 61 65.33 a.35.1.2 105139 1riiA 265 65.46 c.60.1.1 111807 1ie9A 259 66.61 a.123.1.1 62318 1vz0A 230 67.86 a.4.14.1,d.268.1.1 108929,108930 2bk6A 156 68.05 a.25.1.1 128660 1ret 43 72.32 1lea 84 72.73 2b5aA 77 73.72 a.35.1.3 127882 2f4mB 61 73.98 a.189.1.1 132931 1o12A 376 74.38 b.92.1.5,c.1.9.10 80758,80759 2g1kA 176 74.92 c.37.1.2 134519 1es4A 262 75.16 e.3.1.1 42683 1afsA 323 75.51 c.1.7.1 28694 1zr5A 214 75.56 c.50.1.2 125525 1jeqA 609 76.02 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1pveA 72 77.05 a.189.1.1 104322 1oqyA 368 77.32 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2ntoA 201 77.34 2ig3A 127 77.50 1fx7A 230 79.75 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ceo 343 81.53 1vmeA 410 81.57 c.23.5.1,d.157.1.3 108893,108894 3boqA 160 81.86 1obbA 480 82.38 c.2.1.5,d.162.1.2 86760,86761 1z91A 147 83.49 a.4.5.28 124736 1kfuS 184 83.52 a.39.1.8 68574 1jbkA 195 84.11 c.37.1.20 71631 1wpkA 146 84.40 2hhjA 267 84.46 c.60.1.1 136497 1je8A 82 84.70 a.4.6.2 77108 1d2rB 326 84.94 c.26.1.1 31573 2qsfX 171 85.15 1skf 262 85.72 2oa6A 320 85.87 2ebyA 113 87.03 1y7yA 74 87.04 a.35.1.3 122729 2e60A 101 89.89