# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 3.66e-20 2pbxA 203 1.58e-19 2uxuA 210 2.33e-19 3bhqA 211 3.15e-19 2hyjA 200 5.02e-19 2f07A 197 5.72e-19 2zb9A 214 1.06e-18 3ccyA 203 1.14e-18 2dg7A 195 1.53e-18 1vi0A 206 1.63e-18 a.4.1.9,a.121.1.1 100720,100721 2fq4A 192 2.03e-18 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 2.19e-18 3b81A 203 2.65e-18 2g7sA 194 2.68e-18 a.4.1.9,a.121.1.1 134737,134738 2id3A 225 2.88e-18 a.4.1.9,a.121.1.1 137261,137262 2qtqA 213 2.97e-18 3cdlA 203 3.06e-18 2genA 197 3.30e-18 a.4.1.9,a.121.1.1 135062,135063 2id6A 202 3.37e-18 3crjA 199 4.10e-18 2ibdA 204 4.24e-18 3bruA 222 5.56e-18 1rktA 205 5.94e-18 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 6.54e-18 a.4.1.9,a.121.1.1 88017,88018 3c2bA 221 6.87e-18 2of7A 260 7.46e-18 2hytA 197 8.67e-18 2raeA 207 9.04e-18 3colA 196 1.08e-17 2gfnA 209 1.30e-17 a.4.1.9,a.121.1.1 135101,135102 2qibA 231 1.75e-17 1t56A 216 1.81e-17 a.4.1.9,a.121.1.1 106428,106429 2iekA 200 2.05e-17 3cwrA 208 2.73e-17 1qvtA 194 2.77e-17 a.4.1.9,a.121.1.1 104602,104603 2fbqA 235 3.52e-17 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 3.57e-17 a.4.1.9,a.121.1.1 105537,105538 2qcoA 210 3.77e-17 1z77A 200 4.07e-17 a.4.1.9,a.121.1.1 124588,124589 1ui5A 215 4.59e-17 a.4.1.9,a.121.1.1 107856,107857 3cjdA 198 4.80e-17 1zkgA 212 5.20e-17 a.4.1.9,a.121.1.1 125194,125195 2jj7A 186 6.89e-17 2o7tA 199 7.05e-17 2iaiA 230 7.69e-17 2nx4A 194 1.01e-16 1jt6A 188 1.23e-16 a.4.1.9,a.121.1.1 67247,67248 2fx0A 201 1.24e-16 a.4.1.9,a.121.1.1 134269,134270 2zcmA 192 2.99e-16 2i10A 202 3.22e-16 a.4.1.9,a.121.1.1 136960,136961 2q24A 194 3.35e-16 2d6yA 202 3.66e-16 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 5.34e-16 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 5.87e-16 2np5A 203 6.35e-16 a.4.1.9,a.121.1.1 138424,138425 2iu5A 195 6.51e-16 2vprA 207 1.19e-15 2dg8A 193 1.45e-15 1zk8A 183 1.64e-15 a.4.1.9,a.121.1.1 125177,125178 2g3bA 208 1.66e-15 a.4.1.9,a.121.1.1 134558,134559 1t33A 224 1.93e-15 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 2.02e-15 2oerA 214 2.29e-15 3bniA 229 2.43e-15 2qwtA 196 2.69e-15 3bjbA 207 3.22e-15 2fd5A 180 3.73e-15 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 4.42e-15 2optA 234 1.04e-14 2qkoA 215 1.70e-14 2rekA 199 3.14e-14 2yveA 185 3.44e-14 2tct 207 4.56e-14 2g7gA 213 4.98e-14 a.4.1.9,a.121.1.1 134732,134733 1z0xA 220 5.06e-14 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 9.95e-14 2eh3A 179 3.42e-13 1v7bA 185 4.94e-13 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 5.20e-13 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.13e-12 2hkuA 215 2.51e-11 2on5A 206 4.820 2imiA 221 5.620 2hnlA 225 10.97 2gsoA 393 12.16 3cbuA 214 18.24 1ciyA 590 19.34 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1tu7A 208 21.77 a.45.1.1,c.47.1.5 112653,112654 1u0mA 382 21.89 c.95.1.2,c.95.1.2 107557,107558 2pw6A 271 22.06 3bbyA 215 23.84 1ciy 590 23.87 1aw9A 216 24.67 a.45.1.1,c.47.1.5 17736,33030 1f0cA 305 25.72 e.1.1.1 42676 1edg 380 28.02 1jlwA 219 29.16 a.45.1.1,c.47.1.5 71741,71742 2oxoA 103 29.60 1v2aA 210 31.06 a.45.1.1,c.47.1.5 100263,100264 1dmtA 696 31.35 d.92.1.4 40296 1ho8A 480 32.34 a.118.1.9 61107 1mqiA 263 32.72 c.94.1.1 91398 2qxlA 658 33.60 1nhyA 219 33.72 a.45.1.1,c.47.1.5 80520,80521 1oe8A 211 35.49 a.45.1.1,c.47.1.5 86905,86906 1oyjA 231 36.45 a.45.1.1,c.47.1.5 87597,87598 3c0bA 334 38.24 1uwkA 557 39.24 e.51.1.1 108065 2gsqA 202 39.87 a.45.1.1,c.47.1.5 17715,33009 2d4pA 141 40.40 2ntoA 201 42.56 1dlcA 584 48.92 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2aamA 309 50.53 c.1.8.15 126489 1bupA 386 52.82 c.55.1.1,c.55.1.1 33377,33378 2fuqA 747 54.56 1uuqA 440 55.92 c.1.8.3 100015 2hlkA 255 56.85 17gsA 210 61.00 a.45.1.1,c.47.1.5 17524,32818 1rovA 857 61.14 a.119.1.1,b.12.1.1 97674,97675 2scpA 174 61.74 a.39.1.5 17256 2pvqA 201 63.50 1a4mA 349 71.63 c.1.9.1 29014 1huxA 270 72.35 c.55.1.5 61278 1n2aA 201 72.83 a.45.1.1,c.47.1.5 91553,91554 2hwjA 205 73.51 2d0bA 310 74.05 1svsA 353 74.78 c.37.1.8 106051 1ex2A 189 83.86 c.51.4.2 33225 1guqA 348 84.71 d.13.1.2,d.13.1.2 37522,37523 1zd8A 227 88.90