# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cdlA 203 1.86e-13 2ibdA 204 3.12e-13 2uxuA 210 6.93e-13 2pbxA 203 7.45e-13 3bcgA 215 8.51e-13 1vi0A 206 9.40e-13 a.4.1.9,a.121.1.1 100720,100721 1t56A 216 1.03e-12 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 1.48e-12 a.4.1.9,a.121.1.1 134737,134738 3ccyA 203 1.61e-12 1pb6A 212 1.62e-12 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 2.84e-12 2f07A 197 2.92e-12 3crjA 199 3.38e-12 3bruA 222 3.38e-12 2qtqA 213 3.57e-12 3bhqA 211 4.79e-12 2id3A 225 6.47e-12 a.4.1.9,a.121.1.1 137261,137262 2id6A 202 8.20e-12 3b81A 203 1.23e-11 1z77A 200 1.26e-11 a.4.1.9,a.121.1.1 124588,124589 2iekA 200 1.32e-11 2fq4A 192 1.55e-11 a.4.1.9,a.121.1.1 133937,133938 1jt6A 188 2.34e-11 a.4.1.9,a.121.1.1 67247,67248 1rktA 205 2.59e-11 a.4.1.9,a.121.1.1 97623,97624 2genA 197 2.73e-11 a.4.1.9,a.121.1.1 135062,135063 2zb9A 214 2.91e-11 1qvtA 194 3.12e-11 a.4.1.9,a.121.1.1 104602,104603 2iaiA 230 3.45e-11 3c2bA 221 3.89e-11 2jj7A 186 5.12e-11 2fx0A 201 7.51e-11 a.4.1.9,a.121.1.1 134269,134270 2o7tA 199 1.05e-10 1zkgA 212 1.22e-10 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 1.37e-10 3colA 196 1.71e-10 2nx4A 194 3.36e-10 2qibA 231 3.63e-10 3cwrA 208 3.64e-10 2hytA 197 6.84e-10 3cjdA 198 7.14e-10 2g3bA 208 1.42e-09 a.4.1.9,a.121.1.1 134558,134559 2oerA 214 1.79e-09 2i10A 202 1.94e-09 a.4.1.9,a.121.1.1 136960,136961 2zcmA 192 2.54e-09 1ui5A 215 2.59e-09 a.4.1.9,a.121.1.1 107856,107857 2q24A 194 3.31e-09 2qcoA 210 4.67e-09 1zk8A 183 5.63e-09 a.4.1.9,a.121.1.1 125177,125178 2dg7A 195 6.63e-09 2rekA 199 7.67e-09 2fbqA 235 8.05e-09 a.4.1.9,a.121.1.1 133256,133257 3bniA 229 8.26e-09 2d6yA 202 1.04e-08 a.4.1.9,a.121.1.1 131313,131314 2gfnA 209 1.49e-08 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 1.57e-08 1sgmA 191 1.62e-08 a.4.1.9,a.121.1.1 105537,105538 2of7A 260 1.98e-08 1t33A 224 1.99e-08 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 2.33e-08 2oi8A 216 2.44e-08 2eh3A 179 4.07e-08 2guhA 214 4.19e-08 2yveA 185 1.20e-07 3bjbA 207 1.30e-07 2dg8A 193 1.70e-07 2hkuA 215 2.03e-07 2raeA 207 2.24e-07 2iu5A 195 2.70e-07 2g7lA 243 3.05e-07 a.4.1.9,a.121.1.1 134734,134735 2np5A 203 3.10e-07 a.4.1.9,a.121.1.1 138424,138425 2fd5A 180 3.17e-07 a.4.1.9,a.121.1.1 133291,133292 2o7oA 207 4.13e-07 a.4.1.9,a.121.1.1 138930,138931 2optA 234 4.42e-07 2vprA 207 4.67e-07 2qkoA 215 7.18e-07 2g7gA 213 1.03e-06 a.4.1.9,a.121.1.1 134732,134733 2tct 207 2.14e-06 1v7bA 185 3.02e-06 a.4.1.9,a.121.1.1 119861,119862 1z0xA 220 6.02e-06 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 1.45e-05 1a6i 217 2.21e-05 1jlwA 219 4.617 a.45.1.1,c.47.1.5 71741,71742 1wmaA 276 4.854 c.2.1.2 121042 1yzfA 195 5.195 c.23.10.5 124275 1r8sE 203 6.215 a.118.3.1 97248 1pbvA 195 6.517 a.118.3.1 19179 2iksA 293 7.440 2ifuA 307 7.954 2hi4A 495 9.206 2ak3A 226 10.30 c.37.1.1,g.41.2.1 31892,45193 1n5dA 288 11.11 c.2.1.2 80030 1pbv 195 11.31 1r8mE 203 11.61 a.118.3.1 97242 1ea5A 537 12.54 c.69.1.1 34592 2on5A 206 13.25 1x1tA 260 13.53 c.2.1.2 121597 1yixA 265 14.95 c.1.9.12 123371 2d2mA 140 15.13 2q8xA 331 15.23 2q02A 272 17.06 1jfzA 154 18.38 a.149.1.1 66655 1l5oA 356 18.58 c.39.1.1 77711 3b8dA 363 19.36 1jyeA 349 20.34 c.93.1.1 67455 1tlfA 301 20.76 c.93.1.1 35687 2pbyA 308 20.95 1ku1A 230 21.19 a.118.3.1 72996 1d0vA 356 21.51 c.39.1.1 32476 2nugA 221 21.70 1t35A 191 22.05 c.129.1.1 99108 2fepA 289 23.72 4crxA 322 25.06 a.60.9.1,d.163.1.1 18095,42155 1sh5A 245 26.20 a.40.1.1,a.40.1.1 105543,105544 2hnlA 225 27.32 1fw1A 216 27.61 a.45.1.1,c.47.1.5 60051,60052 1aisB 200 28.23 a.74.1.2,a.74.1.2 18384,18385 1clxA 347 28.27 c.1.8.3 28899 1vj1A 363 28.69 b.35.1.2,c.2.1.1 100794,100795 1lm5A 214 29.74 d.211.2.1 74029 2gsqA 202 30.58 a.45.1.1,c.47.1.5 17715,33009 1eg3A 261 32.79 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1nal1 297 32.90 1qusA 322 33.04 d.2.1.6 36991 2qulA 290 33.42 2o23A 265 34.45 c.2.1.2 138884 2d1yA 256 34.59 c.2.1.2 131151 2p9bA 458 35.49 2o20A 332 35.64 2hyvA 308 36.24 1j8yF 297 36.71 a.24.13.1,c.37.1.10 62747,62748 1z7lA 276 36.98 2qw5A 335 37.15 1cnzA 363 37.83 c.77.1.1 35061 2v9dA 343 38.00 1dugA 234 38.84 a.45.1.1,c.47.1.5 17718,33012 3brqA 296 39.05 1w2xA 758 39.38 c.14.1.4,c.14.1.4 109134,109135 1ea9C 583 39.58 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 3xis 387 42.37 1vbuA 328 43.31 c.1.8.3 119963 1bg4A 302 43.62 c.1.8.3 28806 1fvkA 189 43.79 c.47.1.13 90351 2hq1A 247 43.93 2a4kA 263 45.26 c.2.1.2 126156 1e0tA 470 45.82 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2pvqA 201 46.00 2ekpA 239 47.48 2dc5A 231 47.96 4xis 387 48.06 3cmgA 667 48.65 1zd8A 227 48.74 1ex1A 605 49.25 c.1.8.7,c.23.11.1 29013,31347 2rgyA 290 49.40 1ki9A 192 52.53 c.37.1.1 84404 2cw6A 298 52.67 1f3aA 222 54.27 a.45.1.1,c.47.1.5 17701,32995 1adoA 363 55.28 c.1.10.1 29124 2b67A 204 55.33 d.90.1.1 127970 1w7bA 339 56.50 a.65.1.1 114317 1kfcA 268 56.86 c.1.2.4 77371 2vjxA 846 57.76 1tu7A 208 57.98 a.45.1.1,c.47.1.5 112653,112654 1f44A 324 58.18 a.60.9.1,d.163.1.1 64982,64983 6gsvA 217 58.74 a.45.1.1,c.47.1.5 17633,32925 2plrA 213 59.11 1v1rA 400 59.39 c.36.1.11 108272 1p1xA 260 61.07 c.1.10.1 104060 1wdcC 156 62.92 a.39.1.5 17317 2e9lA 469 63.15 2pgeA 377 63.66 2nwqA 272 63.85 1yb1A 272 65.21 c.2.1.2 116599 1f2eA 201 65.30 a.45.1.1,c.47.1.5 17745,33039 2vgeA 229 65.72 2ew8A 249 66.15 c.2.1.2 132447 1w5tA 412 66.44 a.4.5.11,c.37.1.20 114255,114256 1jlvA 209 66.68 a.45.1.1,c.47.1.5 71729,71730 1to3A 304 66.83 c.1.10.1 107161 2bgkA 278 67.54 c.2.1.2 128480 2gzxA 265 68.43 2ntoA 201 68.49 3c86A 328 70.24 2rjoA 332 70.52 1oktA 211 70.76 a.45.1.1,c.47.1.5 93272,93273 2scpA 174 71.24 a.39.1.5 17256 2b6cA 220 71.90 a.118.1.17 127983 2qguA 211 72.02 1n2aA 201 72.25 a.45.1.1,c.47.1.5 91553,91554 2fwmX 250 73.03 2qu7A 288 73.11 1o0wA 252 73.42 a.149.1.1,d.50.1.1 80751,80752 1x6vA 630 73.43 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1xg7A 250 74.07 a.96.1.6 115281 3cbuA 214 74.38 3cnyA 301 75.78 1m0uA 249 76.07 a.45.1.1,c.47.1.5 78359,78360 3bbyA 215 76.28 1i2sA 282 76.39 e.3.1.1 71104 1ebmA 317 76.85 a.96.1.3,d.129.1.2 18751,41300 2qfnA 138 76.96 1g7oA 215 77.96 a.45.1.1,c.47.1.5 60332,60333 1kdoA 227 78.08 c.37.1.1 68478 1gl6A 436 78.15 c.37.1.11 70259 1a05A 358 78.95 c.77.1.1 35059 1ya0A 497 79.05 a.118.8.1 122785 1ltqA 301 79.34 c.108.1.9,c.37.1.1 78208,78209 1wqaA 455 81.34 1m3uA 264 83.04 c.1.12.8 84784 2h9aB 310 83.72 2o8pA 227 84.42 1tw9A 206 84.53 a.45.1.1,c.47.1.5 107381,107382 1qtwA 285 84.59 c.1.15.1 29392 2z8aA 146 84.77 2yzsA 315 84.99 1muwA 386 86.42 c.1.15.3 79495 2jahA 247 86.81 1x38A 602 87.59 c.1.8.7,c.23.11.1 121655,121656 1khtA 192 88.46 c.37.1.1 84401 1eemA 241 89.36 a.45.1.1,c.47.1.5 17717,33011