# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	6.34e-11	d.17.4.10	98525
1nwwA	149	2.74e-10	d.17.4.8	86306
1tuhA	156	3.62e-09	d.17.4.11	107345
2bngA	149	4.99e-09		
1oh0A	131	3.77e-08	d.17.4.3	87004
1ohpA	125	3.86e-08	d.17.4.3	118702
1ocvA	125	8.13e-08	d.17.4.3	86810
1dmmA	131	1.20e-07	d.17.4.3	38114
1buqA	125	2.13e-07	d.17.4.3	38111
1ea2A	131	6.00e-07	d.17.4.3	64860
1opy	131	2.61e-06		
1sjwA	144	2.20e-05	d.17.4.9	98899
2geyA	158	4.00e-05		
2a15A	139	0.000197	d.17.4.3	125973
2ux0A	143	0.001100		
2chcA	170	0.003781		
3cu3A	172	0.01363		
3bb9A	148	0.02837		
1m98A	317	0.03682	a.175.1.1,d.17.4.6	78866,78867
1hkxA	147	0.05075	d.17.4.7	83567
2f86B	143	0.05450		
2rfrA	155	0.07384		
2r4iA	123	0.1107		
2gxfA	142	0.1435		
2owpA	129	0.4204		
2rgqA	144	0.4224		
3cnxA	170	1.051		
1tp6A	128	1.334	d.17.4.12	107184
3blzA	128	2.246		
3b7cA	122	4.888		
2db1A	118	5.644		
1uliB	187	6.061	d.17.4.4	107923
1jkgB	250	11.54	d.17.4.2	66796
2b1xB	172	17.99	d.17.4.4	127677
1bco	327	20.06		
1bcoA	327	23.11	b.48.1.1,c.55.3.3	26431,33676
1ounA	127	29.47	d.17.4.2	38090
1ekqA	272	38.57	c.72.1.2	34941
2gbwB	174	40.17		
1imvA	398	57.19	e.1.1.1	62591
2hglA	136	59.10		
2cw9A	194	59.32	d.17.4.13	130920
2ckfB	174	60.50		
1dkxA	219	63.28	a.8.4.1,b.130.1.1	90339,90340
2b02A	119	66.52		
2hhiA	204	67.33		
1askA	127	69.18	d.17.4.2	38094
1gceA	364	71.84	e.3.1.1	42738
2iorA	235	74.82		
1k8vA	40	75.89	j.6.1.1	72182
1jb2A	127	82.22	d.17.4.2	71624
2ov9A	216	87.06		
2nvmA	126	88.59	d.326.1.1	138631
1svdA	473	89.02	c.1.14.1,d.58.9.1	119057,119058