# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bngA	149	3.60e-14		
1nwwA	149	4.52e-14	d.17.4.8	86306
1s5aA	150	4.66e-14	d.17.4.10	98525
2a15A	139	1.09e-13	d.17.4.3	125973
1tuhA	156	1.74e-13	d.17.4.11	107345
1oh0A	131	3.09e-13	d.17.4.3	87004
1sjwA	144	4.79e-13	d.17.4.9	98899
1ohpA	125	6.24e-13	d.17.4.3	118702
1dmmA	131	6.74e-13	d.17.4.3	38114
2geyA	158	2.49e-12		
2gxfA	142	1.41e-07		
2rfrA	155	1.22e-06		
2chcA	170	1.95e-06		
3bb9A	148	2.68e-06		
3cnxA	170	3.83e-06		
1hkxA	147	6.72e-06	d.17.4.7	83567
3cu3A	172	9.29e-06		
2ux0A	143	1.57e-05		
2r4iA	123	1.89e-05		
3b7cA	122	4.72e-05		
2f86B	143	0.000188		
3blzA	128	0.000445		
1m98A	317	0.000622	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.003403		
2rgqA	144	0.006130		
1tp6A	128	0.02448	d.17.4.12	107184
2imjA	166	0.03209		
2b1xB	172	0.1820	d.17.4.4	127677
1idpA	172	0.7664	d.17.4.1	83685
2gbwB	174	3.184		
1zo2A	129	3.340		
1uliB	187	3.809	d.17.4.4	107923
1gy7A	125	4.198	d.17.4.2	70738
2qyxA	238	5.466		
2qiyA	154	8.025		
1qysA	106	8.854	k.41.1.1	96603
1yreA	197	12.12	d.108.1.1	123919
2qguA	211	12.27		
1gy6A	127	12.32	d.17.4.2	70736
3b33A	115	13.18		
1jkgA	140	13.80	d.17.4.2	66795
2bmoB	194	19.55	d.17.4.4	128806
2a22A	215	23.46	d.159.1.7	126025
1zx2A	147	24.07		
2z10A	194	25.29		
2cw9A	194	28.03	d.17.4.13	130920
2ft0A	235	28.05		
1qstA	160	32.96	d.108.1.1	40804
2fsrA	195	33.18	d.108.1.1	134036
1gybA	125	33.47	d.17.4.2	70744
2fxtA	192	36.27		
1yr0A	175	39.68	d.108.1.1	123905
1vhsA	175	39.71	d.108.1.1	100698
1tuaA	191	41.98	d.51.1.1,d.51.1.1	107321,107322
1tkeA	224	42.79	d.15.10.1,d.67.1.1	112470,112471
1w24A	182	43.42	d.159.1.7	120579
2fckA	181	48.15	d.108.1.1	133272
1wv9A	94	49.93		
1a5zA	319	53.85	c.2.1.5,d.162.1.1	30181,42148
1o7nB	194	55.19	d.17.4.4	81164
2b02A	119	61.95		
2d69A	430	63.48	c.1.14.1,d.58.9.1	131292,131293
1z2wA	192	63.82	d.159.1.7	124390
2ckfB	174	66.90		
1jv1A	505	68.46	c.68.1.5	71892
2ge3A	170	69.03	d.108.1.1	135044
2djkA	133	70.13	c.47.1.2	131548
2dxnA	274	70.70		
1q40B	219	73.64	d.17.4.2	95771
1r2zA	274	78.32	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2e57A	637	81.92		
1yvoA	172	82.07	d.108.1.1	124106
2e3zA	465	82.25		
2obiA	183	83.48		
2cmgA	262	84.72		
2pd8A	149	85.16		
1omrA	201	85.89	a.39.1.5	93349
2r2iA	198	86.99