# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.80e-14	d.17.4.10	98525
2bngA	149	2.42e-14		
1nwwA	149	2.60e-14	d.17.4.8	86306
1tuhA	156	3.60e-14	d.17.4.11	107345
2a15A	139	6.28e-14	d.17.4.3	125973
1oh0A	131	1.21e-13	d.17.4.3	87004
1sjwA	144	2.63e-13	d.17.4.9	98899
1dmmA	131	3.02e-13	d.17.4.3	38114
1ohpA	125	3.25e-13	d.17.4.3	118702
2geyA	158	7.81e-13		
2gxfA	142	7.90e-08		
2rfrA	155	6.82e-07		
2chcA	170	1.17e-06		
3bb9A	148	1.43e-06		
3cnxA	170	1.58e-06		
1hkxA	147	2.15e-06	d.17.4.7	83567
3cu3A	172	7.21e-06		
2r4iA	123	1.09e-05		
2ux0A	143	1.22e-05		
3b7cA	122	1.49e-05		
2f86B	143	8.98e-05		
3blzA	128	0.000284		
1m98A	317	0.000711	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.002924		
2rgqA	144	0.003316		
1tp6A	128	0.01038	d.17.4.12	107184
2imjA	166	0.01168		
2b1xB	172	0.06184	d.17.4.4	127677
1idpA	172	0.2812	d.17.4.1	83685
1uliB	187	1.278	d.17.4.4	107923
2gbwB	174	1.680		
1zo2A	129	3.157		
1gy7A	125	4.433	d.17.4.2	70738
2qguA	211	4.821		
2qyxA	238	5.549		
1gy6A	127	6.922	d.17.4.2	70736
3b33A	115	10.45		
1yreA	197	12.60	d.108.1.1	123919
2qiyA	154	12.67		
1jkgA	140	12.76	d.17.4.2	66795
2bmoB	194	12.88	d.17.4.4	128806
1zx2A	147	15.15		
2cw9A	194	16.49	d.17.4.13	130920
2a22A	215	16.70	d.159.1.7	126025
1tuaA	191	19.35	d.51.1.1,d.51.1.1	107321,107322
2fxtA	192	19.81		
2z10A	194	20.41		
1gybA	125	21.13	d.17.4.2	70744
1o7nB	194	22.70	d.17.4.4	81164
1qysA	106	25.25	k.41.1.1	96603
2ckfB	174	27.70		
1wv9A	94	33.92		
1faaA	124	42.74	c.47.1.1	32738
1z2wA	192	45.91	d.159.1.7	124390
5rubA	490	47.89	c.1.14.1,d.58.9.1	29382,39288
1w24A	182	49.03	d.159.1.7	120579
1vhsA	175	50.79	d.108.1.1	100698
1fxkB	109	50.86	a.2.5.1	15704
1a5zA	319	54.28	c.2.1.5,d.162.1.1	30181,42148
2ft0A	235	54.53		
1r2zA	274	58.29	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2djkA	133	58.43	c.47.1.2	131548
1yr0A	175	66.25	d.108.1.1	123905
2vi7A	177	67.54		
2pftA	571	69.63		
2pdrA	149	71.64		
1q40B	219	72.37	d.17.4.2	95771
2b02A	119	85.03		
1mv8A	436	89.04	a.100.1.4,c.2.1.6,c.26.3.1	85128,85129,85130
2qh5A	308	89.90