# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tuhA 156 1.17e-15 d.17.4.11 107345 1s5aA 150 1.99e-15 d.17.4.10 98525 1nwwA 149 2.55e-15 d.17.4.8 86306 2bngA 149 2.81e-15 2a15A 139 6.28e-15 d.17.4.3 125973 1oh0A 131 1.39e-14 d.17.4.3 87004 1sjwA 144 1.99e-14 d.17.4.9 98899 1ohpA 125 4.38e-14 d.17.4.3 118702 1dmmA 131 4.89e-14 d.17.4.3 38114 2geyA 158 6.17e-14 2gxfA 142 1.85e-09 3cu3A 172 1.62e-07 1hkxA 147 2.71e-07 d.17.4.7 83567 3bb9A 148 3.78e-07 2ux0A 143 3.86e-07 2chcA 170 4.37e-07 2rfrA 155 5.19e-07 3cnxA 170 5.63e-07 2r4iA 123 4.20e-06 3b7cA 122 9.04e-06 2f86B 143 2.62e-05 1m98A 317 3.17e-05 a.175.1.1,d.17.4.6 78866,78867 3blzA 128 0.000104 2rgqA 144 0.000840 2owpA 129 0.001710 1tp6A 128 0.004896 d.17.4.12 107184 2b1xB 172 0.006626 d.17.4.4 127677 2imjA 166 0.1092 1idpA 172 0.2445 d.17.4.1 83685 1uliB 187 0.6746 d.17.4.4 107923 2gbwB 174 0.6975 1o7nB 194 1.746 d.17.4.4 81164 2pnqA 467 2.121 1zo2A 129 3.028 2qiyA 154 3.289 2bmoB 194 4.215 d.17.4.4 128806 1gy7A 125 4.433 d.17.4.2 70738 2qguA 211 4.604 2a22A 215 5.925 d.159.1.7 126025 1gy6A 127 6.020 d.17.4.2 70736 2pdrA 149 6.084 1a5zA 319 6.528 c.2.1.5,d.162.1.1 30181,42148 2pftA 571 7.224 1xnzA 264 8.167 d.127.1.1 115673 1n9eA 787 9.178 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2pyxA 526 9.192 2cw9A 194 10.07 d.17.4.13 130920 2q4zA 312 10.29 1qhfA 240 11.33 c.60.1.1 33960 1ek6A 348 12.04 c.2.1.2 29800 2p7jA 287 12.04 1gybA 125 12.70 d.17.4.2 70744 1zx2A 147 13.08 2yxxA 386 13.82 2hhjA 267 14.03 c.60.1.1 136497 2dxnA 274 16.74 2fxtA 192 17.26 1tuaA 191 18.32 d.51.1.1,d.51.1.1 107321,107322 2d40A 354 21.98 1ne7A 289 22.81 c.124.1.1 91833 2qyxA 238 23.55 2bl0C 142 23.56 1w24A 182 23.75 d.159.1.7 120579 1jkgA 140 26.08 d.17.4.2 66795 1wv9A 94 26.79 2g39A 497 28.33 c.124.1.2,c.124.1.2 134553,134554 2z3yA 662 29.40 2qtcA 886 30.17 2nt0A 497 32.86 b.71.1.2,c.1.8.3 138561,138562 1wp1A 474 36.20 f.5.1.1 114778 3b33A 115 36.75 1kuxA 207 40.06 d.108.1.1 73021 2pd8A 149 40.97 2ft0A 235 41.30 5rubA 490 42.77 c.1.14.1,d.58.9.1 29382,39288 2dq6A 870 42.86 2z84A 218 42.86 1ex2A 189 43.94 c.51.4.2 33225 1tkeA 224 44.40 d.15.10.1,d.67.1.1 112470,112471 2djkA 133 45.40 c.47.1.2 131548 2ckfB 174 47.06 3bzqA 114 53.93 1z2wA 192 54.46 d.159.1.7 124390 2awpA 198 56.59 1mkaA 171 58.55 d.38.1.2 38543 1faaA 124 59.41 c.47.1.1 32738 2z43A 324 59.53 2psoA 237 61.57 1fxkB 109 62.82 a.2.5.1 15704 1yr0A 175 64.01 d.108.1.1 123905 2v95A 371 65.35 2r6fA 972 67.26 2htuA 390 69.14 2olnA 397 71.40 1sekA 378 73.64 e.1.1.1 42675 2c0rA 362 75.49 c.67.1.4 129604 2hdyA 440 75.72 1t15A 214 77.76 c.15.1.3,c.15.1.3 99067,99068 2c1cA 312 78.11 c.56.5.1 129630 2fsrA 195 78.49 d.108.1.1 134036 2d5rA 252 79.01 1b66A 140 79.70 d.96.1.2 40657 1kcwA 1046 79.80 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1q40B 219 80.41 d.17.4.2 95771 2vi7A 177 80.58 2dpmA 284 81.90 c.66.1.28 34246 2j78A 468 84.06 c.1.8.4 138099 1s95A 333 84.18 d.159.1.3 105375 1p2xA 159 84.61 a.40.1.1 104062 1qstA 160 85.46 d.108.1.1 40804 1g7sA 594 87.35 b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2p5qA 170 89.04 1yreA 197 89.18 d.108.1.1 123919