# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.79e-13	d.17.4.10	98525
1nwwA	149	1.96e-13	d.17.4.8	86306
2bngA	149	3.22e-13		
2a15A	139	4.45e-13	d.17.4.3	125973
1tuhA	156	6.12e-13	d.17.4.11	107345
1oh0A	131	2.19e-12	d.17.4.3	87004
1sjwA	144	2.77e-12	d.17.4.9	98899
1ohpA	125	3.62e-12	d.17.4.3	118702
1dmmA	131	4.43e-12	d.17.4.3	38114
2geyA	158	1.28e-11		
2gxfA	142	3.33e-07		
2rfrA	155	2.48e-06		
2chcA	170	5.88e-06		
1hkxA	147	6.64e-06	d.17.4.7	83567
3bb9A	148	7.19e-06		
3cnxA	170	1.09e-05		
3cu3A	172	1.98e-05		
2r4iA	123	6.01e-05		
2ux0A	143	8.37e-05		
3b7cA	122	9.76e-05		
2f86B	143	0.000172		
3blzA	128	0.000468		
1m98A	317	0.004970	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.008868		
2owpA	129	0.01022		
2imjA	166	0.06986		
1tp6A	128	0.08064	d.17.4.12	107184
2b1xB	172	0.2708	d.17.4.4	127677
1idpA	172	0.9915	d.17.4.1	83685
1uliB	187	3.309	d.17.4.4	107923
1gy7A	125	4.288	d.17.4.2	70738
2gbwB	174	5.136		
1zo2A	129	5.214		
2qiyA	154	7.308		
1gy6A	127	7.950	d.17.4.2	70736
1jkgA	140	10.65	d.17.4.2	66795
2qyxA	238	12.79		
2fxtA	192	17.07		
1zx2A	147	17.44		
1gybA	125	18.54	d.17.4.2	70744
2bmoB	194	20.24	d.17.4.4	128806
2qguA	211	24.65		
1yreA	197	27.06	d.108.1.1	123919
2z10A	194	27.41		
3b33A	115	27.89		
1qysA	106	28.65	k.41.1.1	96603
1tkeA	224	33.99	d.15.10.1,d.67.1.1	112470,112471
1tuaA	191	38.45	d.51.1.1,d.51.1.1	107321,107322
2cw9A	194	42.25	d.17.4.13	130920
2djkA	133	44.08	c.47.1.2	131548
1wv9A	94	46.91		
2vi7A	177	50.36		
1fxkB	109	50.89	a.2.5.1	15704
1o7nB	194	51.73	d.17.4.4	81164
1peaA	385	55.00	c.93.1.1	35662
1vhsA	175	56.07	d.108.1.1	100698
1q40B	219	60.54	d.17.4.2	95771
2d69A	430	64.53	c.1.14.1,d.58.9.1	131292,131293
2ckfB	174	72.20		
5rubA	490	72.37	c.1.14.1,d.58.9.1	29382,39288
1r2zA	274	79.02	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2pftA	571	79.71		
2ia7A	134	80.94		
1xewY	172	85.05		
1yr0A	175	85.50	d.108.1.1	123905