# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s5aA 150 1.53e-14 d.17.4.10 98525 1tuhA 156 1.82e-14 d.17.4.11 107345 2bngA 149 3.39e-14 1nwwA 149 6.96e-14 d.17.4.8 86306 2geyA 158 1.14e-13 1sjwA 144 2.58e-13 d.17.4.9 98899 1ohpA 125 4.58e-13 d.17.4.3 118702 2a15A 139 5.93e-13 d.17.4.3 125973 1oh0A 131 6.68e-13 d.17.4.3 87004 1dmmA 131 9.46e-13 d.17.4.3 38114 1opy 131 1.48e-12 1ocvA 125 4.25e-12 d.17.4.3 86810 2gxfA 142 4.35e-08 3cu3A 172 9.76e-08 2ux0A 143 1.06e-07 2rfrA 155 3.39e-07 2r4iA 123 8.65e-07 2chcA 170 1.03e-06 1hkxA 147 3.06e-06 d.17.4.7 83567 3b7cA 122 4.17e-06 3bb9A 148 2.01e-05 2f86B 143 2.24e-05 3cnxA 170 5.07e-05 3blzA 128 0.000231 1m98A 317 0.000787 a.175.1.1,d.17.4.6 78866,78867 1tp6A 128 0.005596 d.17.4.12 107184 2owpA 129 0.04141 2rgqA 144 0.07250 2b1xB 172 0.1449 d.17.4.4 127677 1zx2A 147 0.1551 2gbwB 174 0.2142 2imjA 166 0.2326 2ckfB 174 0.6994 1uteA 313 0.9771 d.159.1.1 42078 1gy6A 127 1.393 d.17.4.2 70736 3stdA 165 1.548 d.17.4.1 38073 1uliB 187 1.884 d.17.4.4 107923 3bczA 293 1.958 1zo2A 129 2.876 2qiyA 154 2.899 1std 172 3.182 1gybA 125 3.654 d.17.4.2 70744 2qguA 211 5.296 1juvA 193 6.762 c.71.1.1 90912 2eh6A 375 7.959 2cw9A 194 8.131 d.17.4.13 130920 2v95A 371 8.176 1ounA 127 8.280 d.17.4.2 38090 2hhjA 267 12.24 c.60.1.1 136497 1gy7A 125 13.51 d.17.4.2 70738 2pnqA 467 14.17 1eg9B 194 15.04 d.17.4.4 38120 1o7nB 194 15.18 d.17.4.4 81164 2bmoB 194 17.04 d.17.4.4 128806 2esrA 177 18.35 c.66.1.46 132344 1tuaA 191 18.36 d.51.1.1,d.51.1.1 107321,107322 1z2wA 192 18.43 d.159.1.7 124390 1xnzA 264 20.08 d.127.1.1 115673 2q4zA 312 20.56 2o8nA 265 21.30 1zdrA 164 23.22 2o07A 304 25.94 c.66.1.17 138862 1suwA 249 27.81 e.52.1.1 106027 1q7fA 286 28.44 b.68.9.1 96036 1ii7A 333 29.51 d.159.1.4 62415 2fckA 181 33.39 d.108.1.1 133272 2c1cA 312 33.52 c.56.5.1 129630 2bo9A 308 34.98 c.56.5.1 128897 1yk3A 210 35.24 d.108.1.1 123493 2db1A 118 35.27 2vdxA 373 35.75 2awpA 198 37.49 2p7jA 287 38.18 1v4pA 157 38.92 d.67.1.2 113533 1n9eA 787 39.36 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2p5qA 170 42.28 1w24A 182 42.28 d.159.1.7 120579 1qpoA 284 46.68 c.1.17.1,d.41.2.1 29561,38597 1bif 469 47.02 1bw0A 416 47.43 c.67.1.1 34385 1twyA 290 47.91 c.94.1.1 112767 1bouB 302 52.80 c.56.6.1 33859 2p2sA 336 52.91 1ooyA 481 54.51 c.124.1.3,c.124.1.2 93388,93389 2veoA 441 54.73 1auiA 521 55.65 d.159.1.3 42085 1qlpA 394 56.24 e.1.1.1 42628 3clwA 507 56.34 1of5B 184 56.82 d.17.4.2 86934 1v7oA 165 57.04 d.67.1.2 100480 1qopB 396 58.33 c.79.1.1 35270 2a4dA 160 59.31 d.20.1.1 126152 3b9fI 395 59.94 1yvoA 172 61.60 d.108.1.1 124106 2vduB 450 62.60 2pu9C 111 63.73 3bwlA 126 64.95 1ml9A 302 65.42 b.85.7.1 79282 2q8uA 336 66.42 2qflA 267 67.22 1ofgA 381 67.30 c.2.1.3,d.81.1.5 30064,39979 2aaa 484 70.17 2pdrA 149 70.52 1v5vA 401 71.04 b.44.2.1,d.250.1.1 113539,113540 1jkgA 140 71.81 d.17.4.2 66795 1qxyA 252 73.75 d.127.1.1 96565 1y3tA 337 74.18 b.82.1.5 122600 1amk 251 75.66 1o97D 320 76.71 c.26.2.3,c.31.1.2 81233,81234 1qhfA 240 77.07 c.60.1.1 33960 1yr0A 175 77.82 d.108.1.1 123905 2gp6A 434 78.15 4uagA 437 78.87 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2bl9A 238 79.81 1z7dA 433 80.86 c.67.1.4 124600 1iq6A 134 81.13 d.38.1.4 76755 1jqgA 433 82.84 c.56.5.1,d.58.3.1 71791,71792 2i2cA 272 83.43 1hzfA 367 85.38 a.102.4.4 76731 1ex2A 189 88.66 c.51.4.2 33225