# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	1.40e-28		
2htaA	309	3.61e-27		
1nszA	347	7.99e-27	b.30.5.4	80724
1snzA	344	1.94e-26	b.30.5.4	98930
1lurA	339	3.18e-26	b.30.5.4	84717
1mmuA	347	4.36e-26	b.30.5.4	79303
1ygaA	342	4.07e-25		
1z45A	699	2.67e-23	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	2.23e-21	b.30.5.7	84192
3blcA	330	0.4166		
1bglA	1023	3.622	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22097,22098,23734,24358,28857
1xfcA	384	5.129		
1wbaA	175	8.074	b.42.4.1	25591
1tenA	90	8.836	b.1.2.1	21990
1jz8A	1023	9.114	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1dp0A	1023	13.69	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
1yewA	382	16.78		
2hp0A	466	21.10		
2a7bA	120	30.27	b.1.10.2	126333
1bqk	124	34.99		
2f0xA	148	39.59	d.38.1.5	132673
1ten	90	39.73		
1gskA	513	40.33	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1aac	105	43.92		
1jidA	128	44.97	d.201.1.1	66735
2msbA	115	46.05	d.169.1.1	42355
2j43A	219	47.83		
2biqA	219	49.68		
2citA	282	49.80	c.1.8.3	130499
1exg	110	50.31		
4ubpB	126	51.63	b.85.3.1	28345
1bxaA	105	51.96	b.6.1.1	22839
2ac7A	235	52.09	c.56.2.1	126543
1rdo1	113	55.44		
2nwfA	141	57.11		
1gyvA	120	59.63	b.1.10.2	70790
1wba	175	59.87		
1qksA	567	60.99	a.3.1.2,b.70.2.1	15951,27710
1o13A	136	61.79	c.55.5.1	80762
1z2aA	168	62.11	c.37.1.8	124374
1adwA	123	63.86	b.6.1.1	22893
2rk9A	145	68.04		
1kfwA	435	69.10	c.1.8.5,d.26.3.1	77376,77377
1u08A	386	73.75	c.67.1.1	107543
1rkuA	206	78.65	c.108.1.11	97627
1czpA	98	79.57	d.15.4.1	37645
2gb3A	409	80.64	c.67.1.1	134903
1offA	97	82.23	d.15.4.1	86947
1rrvA	416	83.47	c.87.1.5	105083
2pjuA	225	86.20		
1gywA	128	86.70	b.1.10.2	70791
1lvk	762	88.91