# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.52e-17		
2hthB	140	2.148	b.55.1.12	136743
2cayA	145	3.800	b.55.1.12	130167
1p97A	114	12.33	d.110.3.7	94382
1zyiA	171	13.17		
2vn4A	599	22.08		
2v76A	107	27.85		
2hxdA	204	28.34		
1x82A	190	35.76	b.82.1.7	114955
1rkd	309	39.67		
2c4eA	302	40.92		
2ejeA	114	49.81		
5palA	109	55.73	a.39.1.4	17215
2c5uA	375	57.39		
2r19A	159	59.73		
1esrA	76	60.36	d.9.1.1	37427
1b8rA	108	61.04	a.39.1.4	17201
4cpvA	108	63.89	a.39.1.4	17198
1c3yA	108	64.13	a.39.2.1	17387
2qcvA	332	68.22		
2e70A	71	70.78		
1g2oA	268	71.94	c.56.2.1	60228
2r91A	286	77.86		
2ojpA	292	81.75		
1b8lA	108	82.44	a.39.1.4	17199
2fv7A	331	82.48	c.72.1.1	134197
1rwyA	109	83.18	a.39.1.4	98002
2nuwA	288	84.07		
1ifyA	49	84.91	a.5.2.1	71207
1nar	290	86.29		
1ryjA	70	86.46	d.15.3.2	98104
1zsqA	528	89.71	b.55.1.8,c.45.1.3	125616,125617