# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	7.02e-18		
2hthB	140	1.490	b.55.1.12	136743
2cayA	145	3.131	b.55.1.12	130167
1p97A	114	6.546	d.110.3.7	94382
1zyiA	171	10.36		
2ejeA	114	11.47		
2r19A	159	27.78		
1lw3A	657	31.64	b.55.1.8,c.45.1.3	91152,91153
1esrA	76	32.79	d.9.1.1	37427
1x82A	190	36.68	b.82.1.7	114955
2hxdA	204	42.54		
1zsqA	528	45.41	b.55.1.8,c.45.1.3	125616,125617
2qcvA	332	46.63		
2ghsA	326	49.01	b.68.6.1	135209
2c5uA	375	49.87		
2v76A	107	53.09		
2dykA	161	57.76		
1c3yA	108	60.46	a.39.2.1	17387
1kshB	152	60.63	b.1.18.8	72915
1pylA	97	65.18	d.1.1.2	104391
1ryjA	70	69.27	d.15.3.2	98104
2vn4A	599	72.16		
2fv7A	331	73.77	c.72.1.1	134197
2jozA	135	80.35		
2qazA	128	82.39		
1g2oA	268	83.55	c.56.2.1	60228
2imqX	282	86.46		
2bkaA	242	89.49	c.2.1.2	128666