# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.38e-16		
2cayA	145	2.670	b.55.1.12	130167
2hthB	140	3.543	b.55.1.12	136743
1zyiA	171	12.17		
1p97A	114	12.31	d.110.3.7	94382
1x82A	190	15.64	b.82.1.7	114955
2ghsA	326	23.71	b.68.6.1	135209
1g2oA	268	26.48	c.56.2.1	60228
1b8rA	108	27.07	a.39.1.4	17201
1b8lA	108	31.15	a.39.1.4	17199
1b9aA	108	31.17	a.39.1.4	17204
1c3yA	108	31.32	a.39.2.1	17387
1pvaA	110	31.89	a.39.1.4	17207
2bz6H	254	32.41	b.47.1.2	129552
4cpvA	108	32.61	a.39.1.4	17198
2ejeA	114	33.45		
1uocA	289	35.50	c.55.3.9	99686
2hxdA	204	36.41		
1rwyA	109	37.62	a.39.1.4	98002
1esrA	76	42.95	d.9.1.1	37427
5palA	109	43.66	a.39.1.4	17215
2c5uA	375	44.54		
1xvjA	109	47.80		
2j9uB	76	50.50		
1kqnA	279	52.00	c.26.1.3	77492
1pylA	97	54.61	d.1.1.2	104391
2bkaA	242	56.36	c.2.1.2	128666
2nwhA	317	60.50		
1wcqA	601	71.02	b.1.18.2,b.18.1.1,b.68.1.1	120894,120895,120896
1c8zA	265	71.64	d.23.1.1	38375
2c4eA	302	75.59		
2qazA	128	77.36		
1ym0A	238	80.57		
1zsqA	528	81.02	b.55.1.8,c.45.1.3	125616,125617
1f37A	110	82.50	c.47.1.11	33088
1ryjA	70	82.62	d.15.3.2	98104
2nuwA	288	83.65		
1tt0A	623	84.97		
1m2aA	110	86.61	c.47.1.11	78472
2qjcA	262	86.80		
1yg2A	179	86.87	a.4.5.61	116681
2ddzA	190	87.83		
1fuiA	591	88.16	b.43.2.1,c.85.1.1	25674,35444