# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.24e-17		
2cayA	145	5.318	b.55.1.12	130167
2hthB	140	5.642	b.55.1.12	136743
2vn4A	599	10.24		
2ejeA	114	16.95		
2qcvA	332	17.66		
1zyiA	171	18.96		
2bz6H	254	22.77	b.47.1.2	129552
1x82A	190	28.81	b.82.1.7	114955
1p97A	114	29.32	d.110.3.7	94382
1rkd	309	32.32		
1c3yA	108	41.62	a.39.2.1	17387
2v76A	107	44.64		
2nuwA	288	45.04		
1pylA	97	47.41	d.1.1.2	104391
2c4eA	302	50.78		
2hxdA	204	50.79		
1nar	290	52.32		
2c5uA	375	55.73		
2ghsA	326	59.85	b.68.6.1	135209
2do9A	115	60.77		
5palA	109	70.03	a.39.1.4	17215
1lyqA	104	71.97	b.1.18.17	78302
4cpvA	108	75.26	a.39.1.4	17198
3caxA	369	76.75		
2r91A	286	78.41		
1rwyA	109	80.45	a.39.1.4	98002
2fv7A	331	80.49	c.72.1.1	134197
1j31A	262	82.80	d.160.1.2	90808
2nwhA	317	83.45		
2hmcA	344	87.16		
1c8zA	265	87.72	d.23.1.1	38375
1dd8A	406	88.59	c.95.1.1,c.95.1.1	35932,35933