# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.15e-16		
2cayA	145	13.15	b.55.1.12	130167
2hthB	140	18.32	b.55.1.12	136743
1c3yA	108	21.58	a.39.2.1	17387
1x82A	190	23.68	b.82.1.7	114955
2gphA	364	24.88		
1a3aA	148	34.29	d.112.1.1	40917
1m2rA	327	36.66	d.144.1.7	84760
1p97A	114	38.15	d.110.3.7	94382
2i1mA	333	47.05		
1lyqA	104	55.77	b.1.18.17	78302
1pmnA	364	56.12	d.144.1.7	94907
1ifyA	49	57.86	a.5.2.1	71207
1t0tV	248	59.81	d.58.4.10	106229
2c5uA	375	61.66		
1x0oA	119	62.68		
2bneA	241	63.84	c.73.1.3	128824
2hxdA	204	67.33		
2i6gA	199	67.60	c.66.1.44	137096
2pr5A	132	72.44		
2fk8A	318	74.13	c.66.1.18	133648
1b8rA	108	74.53	a.39.1.4	17201
2j01Z	206	74.58		
5palA	109	76.43	a.39.1.4	17215
2iwaA	266	77.04		
2qjcA	262	77.63		
1ywrA	360	78.39		
1skoA	143	88.17	d.110.7.1	105676