# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.90e-15		
2hthB	140	2.265	b.55.1.12	136743
2cayA	145	3.628	b.55.1.12	130167
1zyiA	171	11.76		
2qcvA	332	24.53		
1p97A	114	25.19	d.110.3.7	94382
2ejeA	114	25.95		
2ghsA	326	32.70	b.68.6.1	135209
1x82A	190	37.02	b.82.1.7	114955
2c5uA	375	39.27		
2c4eA	302	43.18		
1rkd	309	48.72		
2hqqA	298	60.19		
2fv7A	331	60.49	c.72.1.1	134197
2bz6H	254	61.01	b.47.1.2	129552
1pylA	97	63.14	d.1.1.2	104391
2hxdA	204	65.46		
2vn4A	599	66.41		
4cpvA	108	67.48	a.39.1.4	17198
2v76A	107	69.95		
5palA	109	72.05	a.39.1.4	17215
1b8lA	108	75.79	a.39.1.4	17199
1b8rA	108	75.92	a.39.1.4	17201
1zsqA	528	76.32	b.55.1.8,c.45.1.3	125616,125617
1hnrA	47	78.17	a.155.1.1	17896
1pvaA	110	78.53	a.39.1.4	17207
1b0jA	754	79.91	c.8.2.1,c.83.1.1	30719,35395
1dd8A	406	86.62	c.95.1.1,c.95.1.1	35932,35933
2nuwA	288	87.80		
1rwyA	109	88.92	a.39.1.4	98002
1lyqA	104	89.12	b.1.18.17	78302
1j31A	262	89.79	d.160.1.2	90808