# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b77A 193 8.66e-18 2c5uA 375 0.2588 1px5A 349 1.271 a.160.1.2,d.218.1.6 95277,95278 2qcvA 332 3.381 2e9xC 219 5.104 2hthB 140 5.580 b.55.1.12 136743 2cayA 145 5.998 b.55.1.12 130167 5palA 109 7.925 a.39.1.4 17215 2nx9A 464 8.110 1s9aA 257 9.057 b.3.6.1 105379 2au3A 407 9.276 2o0uA 364 11.47 d.144.1.7 138868 2i2lA 142 13.36 2e7uA 424 13.41 1xyfA 436 13.84 b.42.2.1,c.1.8.3 25577,28909 1tt0A 623 14.20 1ahjB 212 15.95 b.34.4.4 24601 1ogpA 393 16.37 b.1.18.6,d.176.1.1 92927,92928 1y12A 165 16.63 b.157.1.1 122516 1rwyA 109 17.02 a.39.1.4 98002 1feuA 206 17.05 b.53.1.1 59801 1euwA 152 17.23 b.85.4.1 28349 2egvA 229 17.99 1f52A 468 19.33 d.15.9.1,d.128.1.1 37839,41169 1b8rA 108 21.98 a.39.1.4 17201 1rkd 309 22.33 4ubpC 570 22.88 b.92.1.1,c.1.9.2 28431,29053 1dtyA 429 23.15 c.67.1.4 34495 2absA 383 23.19 c.72.1.1 126534 2v3zA 440 26.04 1q7fA 286 27.91 b.68.9.1 96036 1vns 609 28.02 5fbpA 335 28.16 e.7.1.1 42873 1qtqA 553 28.29 b.53.1.2,c.26.1.1 26940,31579 1xwwA 157 28.50 2aaa 484 30.17 1vnsA 609 31.19 a.111.1.3 19061 2v76A 107 31.22 2pkfA 334 31.61 1zyiA 171 34.87 1y7bA 542 35.08 b.29.1.23,b.67.2.1 122687,122688 1b79A 119 36.00 a.81.1.1 18451 1lg2A 365 36.19 c.1.8.5,d.26.3.1 77950,77951 2j6gA 266 37.06 1pylA 97 38.19 d.1.1.2 104391 1lniA 96 38.21 d.1.1.2 74046 1accA 735 38.49 f.11.1.1 43828 2bdgA 223 38.90 1l6nA 289 38.96 a.61.1.1,a.73.1.1 73624,73625 1x82A 190 39.52 b.82.1.7 114955 1nrkA 328 39.74 b.44.2.1,d.250.1.1 92089,92090 1wthD 391 39.75 b.106.1.1,b.106.1.1 121268,121269 1qh4A 380 41.00 a.83.1.1,d.128.1.2 18462,41197 2dykA 161 41.06 1p97A 114 41.74 d.110.3.7 94382 1iznA 286 42.10 e.43.1.1 83847 1ecrA 309 43.02 e.2.1.1 42678 2nq5A 755 44.12 2fv7A 331 44.49 c.72.1.1 134197 2i2cA 272 46.70 4cpvA 108 47.29 a.39.1.4 17198 1ltdA 506 48.67 c.1.4.1,d.120.1.1 28618,41086 3bkbA 377 50.13 1c3yA 108 50.13 a.39.2.1 17387 2a19B 284 50.39 1b1yA 500 51.45 c.1.8.1 28796 1nar 290 51.92 1rfzA 168 52.88 a.195.1.1 97411 2vadA 223 55.90 2c4mA 796 57.75 1bu6O 501 59.07 c.55.1.4,c.55.1.4 33499,33500 2i0kA 561 59.70 2e5vA 472 60.29 1hurA 180 60.96 c.37.1.8 32052 2fp4B 395 61.17 c.23.4.1,d.142.1.4 133897,133898 1ijhA 504 61.26 c.3.1.2,d.16.1.1 66161,66162 1h4uA 265 61.80 d.22.1.2,g.3.11.5 60622,60623 1emsA 440 64.71 d.13.1.1,d.160.1.1 37520,42086 1pytC 253 64.71 b.47.1.2 26233 2gk4A 232 64.80 1qoiA 177 66.13 b.62.1.1 27490 1tkiA 321 66.52 d.144.1.7 41638 2yx0A 342 66.71 1xvjA 109 66.99 1kxuA 333 67.55 a.74.1.1,a.74.1.1 18358,18359 1wp5A 323 68.93 b.68.10.1 114780 1tyvA 554 73.22 b.80.1.6 28038 1zz1A 369 73.30 1clqA 903 75.60 c.55.3.5,e.8.1.1 33717,43006 2f2uA 402 76.32 1ew2A 513 76.80 c.76.1.1 59525 1rkdA 309 77.11 c.72.1.1 34928 1esrA 76 77.77 d.9.1.1 37427 1at0A 145 79.48 b.86.1.1 28374 2q4aA 330 82.02 b.82.2.8 139839 2bbdA 350 82.46 1b8lA 108 86.80 a.39.1.4 17199 1xvlA 321 89.20 c.92.2.2 122380