# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.94e-18		
2hthB	140	6.149	b.55.1.12	136743
2cayA	145	7.885	b.55.1.12	130167
1p97A	114	9.562	d.110.3.7	94382
1zyiA	171	11.86		
2ejeA	114	13.30		
2qcvA	332	14.32		
1x82A	190	17.57	b.82.1.7	114955
2vn4A	599	22.68		
1nar	290	36.49		
2c5uA	375	37.97		
2bz6H	254	39.54	b.47.1.2	129552
2hxdA	204	49.13		
2ghsA	326	53.10	b.68.6.1	135209
2c4eA	302	58.21		
1pylA	97	64.38	d.1.1.2	104391
1rkd	309	66.21		
2hqqA	298	67.88		
2nwhA	317	71.38		
2j01Z	206	74.71		
2j9uB	76	75.29		
1dgmA	363	76.67	c.72.1.1	34936
1b0jA	754	77.94	c.8.2.1,c.83.1.1	30719,35395
2r19A	159	79.13		
2dykA	161	82.30		
2fv7A	331	84.61	c.72.1.1	134197
2j4hA	193	85.50		
2v76A	107	86.63		
1dd8A	406	89.36	c.95.1.1,c.95.1.1	35932,35933
1f4lA	551	89.93	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650