# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.47e-16		
2cayA	145	7.949	b.55.1.12	130167
2ejeA	114	8.496		
1p97A	114	9.893	d.110.3.7	94382
2hthB	140	12.87	b.55.1.12	136743
1zyiA	171	15.43		
2qcvA	332	30.09		
2vn4A	599	31.68		
1x82A	190	39.81	b.82.1.7	114955
1pprM	312	41.32	a.131.1.1,a.131.1.1	19502,19503
2hxdA	204	41.62		
1c8zA	265	47.06	d.23.1.1	38375
2r19A	159	50.58		
2ghsA	326	52.06	b.68.6.1	135209
1rkd	309	52.14		
1nar	290	52.37		
2bz6H	254	57.14	b.47.1.2	129552
2c5uA	375	58.03		
2nwhA	317	59.70		
2c4eA	302	70.26		
2pr5A	132	73.10		
2j9uB	76	77.46		
2bkaA	242	79.41	c.2.1.2	128666
1pylA	97	81.97	d.1.1.2	104391
2pdrA	149	84.32		
2hqqA	298	84.87		
1dd8A	406	84.99	c.95.1.1,c.95.1.1	35932,35933