# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.84e-17		
2cayA	145	5.462	b.55.1.12	130167
2hthB	140	7.230	b.55.1.12	136743
1zyiA	171	17.25		
2qcvA	332	18.20		
1p97A	114	18.37	d.110.3.7	94382
2ejeA	114	19.90		
2vn4A	599	24.43		
1x82A	190	26.68	b.82.1.7	114955
1c8zA	265	38.24	d.23.1.1	38375
1pprM	312	38.86	a.131.1.1,a.131.1.1	19502,19503
1rkd	309	39.04		
2c5uA	375	41.09		
1r0pA	312	49.30	d.144.1.7	96734
2c4eA	302	49.66		
2bz6H	254	50.10	b.47.1.2	129552
2ghsA	326	51.41	b.68.6.1	135209
1g2oA	268	55.39	c.56.2.1	60228
2nwhA	317	56.52		
2v76A	107	57.29		
2gphA	364	63.44		
1nar	290	63.92		
2nuwA	288	65.20		
2dykA	161	67.25		
2hxdA	204	70.99		
1dd8A	406	76.65	c.95.1.1,c.95.1.1	35932,35933
2hqqA	298	77.12		
1lyqA	104	80.60	b.1.18.17	78302
2j9uB	76	87.21		
1dgmA	363	87.27	c.72.1.1	34936
2fv7A	331	88.21	c.72.1.1	134197