# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.25e-15		
2hthB	140	7.415	b.55.1.12	136743
2cayA	145	11.31	b.55.1.12	130167
1p97A	114	19.22	d.110.3.7	94382
2gphA	364	19.31		
1nx8A	273	25.21	b.82.2.8	86374
3bu3A	306	25.63		
3bq5A	766	25.78		
2pr5A	132	36.53		
2qcvA	332	38.37		
1lyqA	104	39.50	b.1.18.17	78302
1zzlA	351	43.35	d.144.1.7	125910
2i1mA	333	45.98		
1sqwA	188	46.12	b.122.1.1,d.17.6.3	119033,119034
2vn4A	599	48.25		
2c4eA	302	53.70		
2pdrA	149	55.90		
1m2rA	327	68.01	d.144.1.7	84760
1q41A	424	68.05	d.144.1.7	95774
2hqqA	298	68.10		
2nruA	307	74.55		
1tvoA	368	77.30		
2hlzA	312	81.36		
2nuwA	288	81.57		
2hxdA	204	83.79		
2ojpA	292	88.51