# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.32e-16		
2cayA	145	0.1144	b.55.1.12	130167
1zsqA	528	2.050	b.55.1.8,c.45.1.3	125616,125617
2r19A	159	4.164		
2hthB	140	5.420	b.55.1.12	136743
1o7zA	77	16.11	d.9.1.1	86660
1yvoA	172	17.88	d.108.1.1	124106
2h7dA	101	18.80		
4cpvA	108	26.70	a.39.1.4	17198
1akyA	220	30.00	c.37.1.1,g.41.2.1	31896,45197
2bsqA	146	30.21	c.120.1.1	129098
2v76A	107	30.83		
1zirA	173	38.96	b.11.1.1,b.11.1.1	125126,125127
2gclA	261	42.10	b.55.1.10	134991
2djaA	84	43.74		
2h1cA	139	45.80	c.120.1.1	135944
1v6zA	228	51.02	b.122.1.2,c.116.1.5	113551,113552
1w1hA	151	53.73	b.55.1.1	114076
2j8mA	172	53.78		
1ktbA	405	56.63	b.71.1.1,c.1.8.1	72960,72961
2rgxA	206	59.32		
2b5nA	323	62.27		
1fjgE	162	63.20	d.14.1.1,d.50.1.2	37553,38789
1tl2A	236	70.64	b.67.1.1	27541
1on0A	158	72.99	d.108.1.1	87095
2bs2B	241	73.77	a.1.2.1,d.15.4.2	129033,129034
1otjA	283	76.57	b.82.2.5	93517
1okiA	210	81.15	b.11.1.1,b.11.1.1	93255,93256
1jr7A	311	81.98	b.82.2.3	63255
2pg0A	385	84.31		
2ddzA	190	88.29		
1e8cA	498	89.52	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379