# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.69e-15		
2cayA	145	0.1183	b.55.1.12	130167
1zsqA	528	0.8132	b.55.1.8,c.45.1.3	125616,125617
2r19A	159	2.153		
2hthB	140	4.773	b.55.1.12	136743
2h7dA	101	9.091		
1yvoA	172	15.66	d.108.1.1	124106
1o7zA	77	17.06	d.9.1.1	86660
1akyA	220	23.28	c.37.1.1,g.41.2.1	31896,45197
2bsqA	146	26.31	c.120.1.1	129098
2gclA	261	28.44	b.55.1.10	134991
1gg3A	279	35.89	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1z4eA	153	40.38	d.108.1.1	124431
1zirA	173	42.30	b.11.1.1,b.11.1.1	125126,125127
2v76A	107	46.13		
1w1hA	151	48.57	b.55.1.1	114076
2j8mA	172	52.66		
1nx8A	273	53.06	b.82.2.8	86374
1otjA	283	53.31	b.82.2.5	93517
2h1cA	139	53.38	c.120.1.1	135944
1oihA	301	54.74	b.82.2.5	93051
1on0A	158	54.80	d.108.1.1	87095
2b5nA	323	55.05		
1tl2A	236	56.83	b.67.1.1	27541
1h4rA	314	59.23	a.11.2.1,b.55.1.5,d.15.1.4	65616,65617,65618
1jr7A	311	63.73	b.82.2.3	63255
2rgxA	206	63.89		
4cpvA	108	66.42	a.39.1.4	17198
2r61A	208	74.18		
1ktbA	405	76.21	b.71.1.1,c.1.8.1	72960,72961
1okiA	210	77.52	b.11.1.1,b.11.1.1	93255,93256
1zyiA	171	77.87		
2djaA	84	78.09		
2al6A	375	83.28	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
2q4kA	251	87.55	d.86.1.2	139864