# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	9.72e-14		
2cayA	145	0.3791	b.55.1.12	130167
2r19A	159	3.850		
1zsqA	528	5.915	b.55.1.8,c.45.1.3	125616,125617
1x8bA	289	19.84		
4cpvA	108	21.97	a.39.1.4	17198
2gclA	261	30.21	b.55.1.10	134991
2bsqA	146	30.84	c.120.1.1	129098
1akyA	220	32.74	c.37.1.1,g.41.2.1	31896,45197
2h7dA	101	33.44		
2hthB	140	36.62	b.55.1.12	136743
1r0pA	312	41.88	d.144.1.7	96734
1zirA	173	42.81	b.11.1.1,b.11.1.1	125126,125127
2h1cA	139	48.45	c.120.1.1	135944
1yvoA	172	48.53	d.108.1.1	124106
1jr7A	311	57.17	b.82.2.3	63255
2ga9D	469	60.88		
1qexA	288	63.01	b.32.1.1	24425
1o7zA	77	64.33	d.9.1.1	86660
2q4kA	251	65.08	d.86.1.2	139864
1j1bA	420	65.61	d.144.1.7	90758
1rwyA	109	68.91	a.39.1.4	98002
1tkiA	321	69.15	d.144.1.7	41638
2nnwA	376	70.77		
1pprM	312	72.20	a.131.1.1,a.131.1.1	19502,19503
2v76A	107	73.16		
1nx8A	273	73.60	b.82.2.8	86374
1qf9A	194	75.55	c.37.1.1	31848
1zyiA	171	76.72		
1v6zA	228	76.77	b.122.1.2,c.116.1.5	113551,113552
1rroA	108	76.86	a.39.1.4	17195
2o7rA	338	78.02		
2bs2B	241	79.01	a.1.2.1,d.15.4.2	129033,129034
2rgxA	206	79.33		
2djaA	84	80.29		
1ktbA	405	82.07	b.71.1.1,c.1.8.1	72960,72961
1mwpA	96	86.09	d.170.2.1	42453
2qm1A	326	87.77		
2i7vA	459	88.83		
1otjA	283	89.27	b.82.2.5	93517