# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	5.08e-12		
2cayA	145	0.4405	b.55.1.12	130167
1oihA	301	12.41	b.82.2.5	93051
1nx8A	273	14.55	b.82.2.8	86374
1otjA	283	15.71	b.82.2.5	93517
2hthB	140	18.08	b.55.1.12	136743
1jr7A	311	20.29	b.82.2.3	63255
2r19A	159	22.17		
1zsqA	528	32.92	b.55.1.8,c.45.1.3	125616,125617
2q4kA	251	34.66	d.86.1.2	139864
1yvoA	172	35.16	d.108.1.1	124106
2i7vA	459	40.36		
1z4eA	153	44.94	d.108.1.1	124431
2v0uA	146	59.27		
2j8mA	172	59.48		
1ktbA	405	60.98	b.71.1.1,c.1.8.1	72960,72961
1pmnA	364	61.42	d.144.1.7	94907
1gg3A	279	63.30	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1pprM	312	68.93	a.131.1.1,a.131.1.1	19502,19503
1o7zA	77	69.24	d.9.1.1	86660
2b5nA	323	74.79		
1t3kA	152	77.06	c.46.1.1	106357
1t46A	313	86.45	d.144.1.7	106397
2o28A	184	86.67		
2cy2A	174	87.63	d.108.1.1	131016
1qfgA	725	89.49	f.4.3.3	43803