# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.17e-14		
2cayA	145	0.2292	b.55.1.12	130167
2r19A	159	2.724		
1zsqA	528	3.824	b.55.1.8,c.45.1.3	125616,125617
2h7dA	101	14.51		
2hthB	140	16.47	b.55.1.12	136743
2bsqA	146	20.30	c.120.1.1	129098
4cpvA	108	23.26	a.39.1.4	17198
1akyA	220	23.40	c.37.1.1,g.41.2.1	31896,45197
2h1cA	139	35.62	c.120.1.1	135944
1v6zA	228	38.10	b.122.1.2,c.116.1.5	113551,113552
1o7zA	77	43.21	d.9.1.1	86660
2q4kA	251	54.35	d.86.1.2	139864
2gclA	261	60.95	b.55.1.10	134991
1mwpA	96	60.98	d.170.2.1	42453
2b5nA	323	63.32		
2djaA	84	64.34		
1yvoA	172	67.17	d.108.1.1	124106
2guiA	194	68.56	c.55.3.5	135737
1y0bA	197	72.17	c.61.1.1	122476
2rgxA	206	73.03		
1zirA	173	74.74	b.11.1.1,b.11.1.1	125126,125127
1jr7A	311	78.79	b.82.2.3	63255
2p12A	176	81.61		
1tkiA	321	81.71	d.144.1.7	41638
1zyiA	171	85.69		
2i7vA	459	88.77