# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.25e-14		
2cayA	145	0.5081	b.55.1.12	130167
1px5A	349	2.036	a.160.1.2,d.218.1.6	95277,95278
2ho3A	325	2.257		
1fgkA	310	2.360	d.144.1.7	41693
2egvA	229	4.434		
1r9dA	787	4.504	c.7.1.1	104865
2q4kA	251	5.011	d.86.1.2	139864
2f57A	317	7.053		
1rroA	108	8.885	a.39.1.4	17195
1euwA	152	9.372	b.85.4.1	28349
2r3iA	298	10.01		
3cu3A	172	10.34		
2nx9A	464	11.04		
1tkiA	321	11.04	d.144.1.7	41638
1e8cA	498	13.66	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
2yzsA	315	14.40		
4cpvA	108	15.15	a.39.1.4	17198
1jmmA	377	15.34	b.30.6.1	71749
2a19B	284	15.68		
2g9zA	348	15.89		
2pg0A	385	16.62		
1l7dA	384	16.64	c.2.1.4,c.23.12.2	77774,77775
2jamA	304	17.39		
2hi2A	158	18.42		
3buuA	229	18.67		
2hthB	140	22.56	b.55.1.12	136743
1rwyA	109	22.66	a.39.1.4	98002
2v3zA	440	23.55		
1wpoA	256	23.67	b.57.1.1	27012
2yxoA	267	24.29		
1bw0A	416	24.36	c.67.1.1	34385
2fstX	367	24.43		
2gclA	261	26.04	b.55.1.10	134991
1nynA	131	27.47	d.235.1.1	86410
1a41A	234	29.21	d.163.1.2	42174
1mrgA	263	33.79	d.165.1.1	42183
2rdqA	288	34.08		
1vprA	374	34.31	b.60.1.7	120066
1dmhA	311	34.55	b.3.6.1	22633
1o7zA	77	37.80	d.9.1.1	86660
1otjA	283	38.61	b.82.2.5	93517
2f9lA	199	41.82	c.37.1.8	133166
2hhjA	267	42.07	c.60.1.1	136497
1tuhA	156	42.32	d.17.4.11	107345
2pnfA	248	43.05		
1phkA	298	44.93	d.144.1.7	41635
2dkfA	431	44.94		
1csnA	298	45.97	d.144.1.7	41664
1v5vA	401	46.17	b.44.2.1,d.250.1.1	113539,113540
1kutA	230	46.76	d.143.1.1	73017
1zz1A	369	48.98		
2h7dA	101	49.58		
1vioA	243	49.88	d.265.1.3,d.66.1.5	100762,100763
3c10A	423	51.10		
1w1hA	151	51.26	b.55.1.1	114076
1qexA	288	52.73	b.32.1.1	24425
2gq1A	332	55.30		
1jpaA	312	56.19	d.144.1.7	67011
1a41	234	56.80		
2b5nA	323	58.62		
3bkbA	377	58.77		
2o0uA	364	59.09	d.144.1.7	138868
1bifA	469	62.31	c.37.1.7,c.60.1.4	31961,34003
1n9eA	787	62.92	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2aukA	190	63.06		
3b34A	891	64.23		
1xvlA	321	64.84	c.92.2.2	122380
2qc1B	212	67.47		
1d0cA	444	67.98	d.174.1.1	64769
1w7lA	422	68.09	c.67.1.1	109226
2v76A	107	70.16		
1mwpA	96	70.19	d.170.2.1	42453
1pq4A	291	72.89	c.92.2.2	94995
2gupA	292	75.91	c.55.1.10,c.55.1.10	135744,135745
1vyrA	364	77.21	c.1.4.1	108906
2oqzA	223	77.32	b.100.1.1	139255
2nxvA	249	77.46		
1sgvA	316	78.29	b.122.1.1,d.265.1.2	98858,98859
1fjgE	162	78.83	d.14.1.1,d.50.1.2	37553,38789
2v5xA	388	79.44		
1ia6A	441	79.88	a.102.1.2	76738
2f4eA	180	81.70		
1lv7A	257	82.33	c.37.1.20	78232
2boyA	254	82.38		
2bazA	142	83.23		
1nrwA	288	85.81	c.108.1.10	86128
3c0iA	351	86.91		
1vqzA	341	87.67	d.224.1.3,d.104.1.3	120426,120427
2hpuA	175	88.82