# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.62e-14		
2cayA	145	0.2355	b.55.1.12	130167
2r19A	159	2.599		
1zsqA	528	3.778	b.55.1.8,c.45.1.3	125616,125617
2hthB	140	14.83	b.55.1.12	136743
1akyA	220	19.82	c.37.1.1,g.41.2.1	31896,45197
2h7dA	101	20.36		
2bsqA	146	26.59	c.120.1.1	129098
4cpvA	108	41.18	a.39.1.4	17198
1yvoA	172	45.00	d.108.1.1	124106
1jr7A	311	46.08	b.82.2.3	63255
1ktbA	405	46.75	b.71.1.1,c.1.8.1	72960,72961
2h1cA	139	47.28	c.120.1.1	135944
1nx8A	273	47.32	b.82.2.8	86374
1tkiA	321	52.16	d.144.1.7	41638
1o7zA	77	52.71	d.9.1.1	86660
1oihA	301	55.51	b.82.2.5	93051
2djaA	84	58.62		
1mwpA	96	61.22	d.170.2.1	42453
1zirA	173	62.48	b.11.1.1,b.11.1.1	125126,125127
1v6zA	228	64.88	b.122.1.2,c.116.1.5	113551,113552
1qexA	288	67.11	b.32.1.1	24425
2rgxA	206	68.83		
2ddzA	190	75.01		
2q4kA	251	75.35	d.86.1.2	139864
2v76A	107	76.56		
1y0bA	197	77.13	c.61.1.1	122476
1kptA	105	80.00	d.70.1.1	39588
1otjA	283	87.41	b.82.2.5	93517