# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.81e-14		
2cayA	145	0.4243	b.55.1.12	130167
2r19A	159	1.699		
1zsqA	528	9.96	b.55.1.8,c.45.1.3	125616,125617
1akyA	220	20.16	c.37.1.1,g.41.2.1	31896,45197
2hthB	140	24.37	b.55.1.12	136743
2bsqA	146	27.03	c.120.1.1	129098
2h7dA	101	31.67		
2djaA	84	40.62		
1o7zA	77	42.06	d.9.1.1	86660
1zirA	173	43.03	b.11.1.1,b.11.1.1	125126,125127
2rgxA	206	44.58		
2h1cA	139	47.19	c.120.1.1	135944
1ktbA	405	47.26	b.71.1.1,c.1.8.1	72960,72961
2gdnA	267	53.78		
1yvoA	172	54.09	d.108.1.1	124106
2q4kA	251	58.49	d.86.1.2	139864
1otjA	283	65.75	b.82.2.5	93517
3cg5A	265	68.17		
4cpvA	108	68.18	a.39.1.4	17198
1nx8A	273	69.54	b.82.2.8	86374
1kptA	105	75.13	d.70.1.1	39588
1jr7A	311	77.86	b.82.2.3	63255
1zyiA	171	79.70		
2d3vA	196	80.03		
2pg0A	385	85.68		
1ak2A	233	85.73	c.37.1.1,g.41.2.1	31894,45195
3c5cA	187	88.34