# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	4.53e-14		
2cayA	145	0.1973	b.55.1.12	130167
2r19A	159	2.546		
1zsqA	528	3.935	b.55.1.8,c.45.1.3	125616,125617
2hthB	140	14.00	b.55.1.12	136743
2h7dA	101	14.24		
1o7zA	77	21.22	d.9.1.1	86660
1zirA	173	23.78	b.11.1.1,b.11.1.1	125126,125127
1kptA	105	25.01	d.70.1.1	39588
1yvoA	172	29.19	d.108.1.1	124106
1akyA	220	30.78	c.37.1.1,g.41.2.1	31896,45197
2bsqA	146	36.28	c.120.1.1	129098
1nx8A	273	38.33	b.82.2.8	86374
2gclA	261	48.99	b.55.1.10	134991
1oihA	301	53.60	b.82.2.5	93051
2i7vA	459	53.78		
2djaA	84	55.60		
1ktbA	405	58.41	b.71.1.1,c.1.8.1	72960,72961
1otjA	283	58.94	b.82.2.5	93517
2d3vA	196	62.15		
3c5cA	187	62.30		
2h1cA	139	68.14	c.120.1.1	135944
1zyiA	171	70.62		
1jr7A	311	71.90	b.82.2.3	63255
2oxgA	108	75.96		
1r6xA	395	77.15	b.122.1.3,c.26.1.5	97167,97168
1gg3A	279	79.22	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
2rgxA	206	79.29		
2v76A	107	80.13		
4cpvA	108	84.75	a.39.1.4	17198
2ddzA	190	87.77		
2pg0A	385	89.14