# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	2.56e-12		
2cayA	145	0.4755	b.55.1.12	130167
1nx8A	273	6.257	b.82.2.8	86374
2hthB	140	7.425	b.55.1.12	136743
1oihA	301	8.605	b.82.2.5	93051
2r19A	159	8.921		
1jr7A	311	9.177	b.82.2.3	63255
1yvoA	172	14.94	d.108.1.1	124106
2i79A	172	19.12		
1otjA	283	19.26	b.82.2.5	93517
2i7vA	459	29.82		
1zsqA	528	36.21	b.55.1.8,c.45.1.3	125616,125617
2q4kA	251	40.47	d.86.1.2	139864
1z4eA	153	41.04	d.108.1.1	124431
2bsqA	146	49.55	c.120.1.1	129098
2gj3A	120	55.76		
2j8mA	172	63.95		
1on0A	158	64.75	d.108.1.1	87095
2izzA	322	65.56		
1r6xA	395	68.55	b.122.1.3,c.26.1.5	97167,97168
1wwzA	159	68.97	d.108.1.1	121380
1qfgA	725	71.06	f.4.3.3	43803
1px5A	349	76.87	a.160.1.2,d.218.1.6	95277,95278
2ddzA	190	78.94