# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b77A 193 4.99e-09 1zsqA 528 0.1373 b.55.1.8,c.45.1.3 125616,125617 1gg3A 279 0.4356 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1h4rA 314 0.5846 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2cayA 145 1.011 b.55.1.12 130167 2hthB 140 1.072 b.55.1.12 136743 1mixA 206 2.267 a.11.2.1,b.55.1.5 79166,79167 1w1hA 151 2.604 b.55.1.1 114076 2h7dA 101 3.542 1p5tA 127 5.556 b.55.1.2 94148 2dfkA 402 5.781 2he7A 283 5.884 2gclA 261 6.123 b.55.1.10 134991 1eazA 125 11.62 b.55.1.1 70113 2d4qA 257 11.87 2z0qA 346 12.19 2al6A 375 13.06 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1g99A 408 13.33 c.55.1.2,c.55.1.2 33457,33458 1n5nA 180 15.32 d.167.1.1 85336 1ntyA 311 16.00 a.87.1.1,b.55.1.1 103873,103874 1xeoA 168 16.05 d.167.1.1 121913 2ew5A 181 18.19 2q4kA 251 20.28 d.86.1.2 139864 3by4A 212 22.24 2i5fA 109 22.52 2ciaA 102 22.64 2v1yA 108 24.35 1foeA 377 24.43 a.87.1.1,b.55.1.1 18517,26969 1qg7A 67 25.85 d.9.1.1 37449 1gnuA 117 26.45 d.15.1.3 65403 1j0wA 103 26.57 b.55.1.2 90748 1xyiA 66 27.06 3bs1A 103 27.70 2o28A 184 28.69 1y6hA 177 28.97 d.167.1.1 116505 1ki1B 352 29.16 a.87.1.1,b.55.1.1 72497,72498 1v5pA 126 29.46 b.55.1.1 108382 2ddmA 283 29.79 2gwdA 449 30.34 1vptA 348 30.39 c.66.1.25 34207 1esrA 76 30.99 d.9.1.1 37427 1rl4A 188 31.29 d.167.1.1 97636 1tv8A 340 31.35 c.1.28.3 107352 1eo6A 117 31.92 d.15.1.3 37609 2v76A 107 32.60 2i79A 172 36.16 2f57A 317 37.66 1tvxA 75 38.81 d.9.1.1 37441 2adzA 178 42.10 b.55.1.1 126599 1dokA 77 42.92 d.9.1.1 37420 2j0iA 303 46.39 2a0jA 149 46.65 1lhpA 312 47.08 c.72.1.5 77960 2os0A 188 47.82 2q5wE 149 48.94 2g35A 100 49.07 b.55.1.5 134548 2omdA 154 49.26 1hy5A 136 49.45 a.24.11.1 65955 2p25A 126 51.95 1a15A 67 52.47 d.9.1.1 37451 2yy3A 91 54.66 1ws0A 156 55.02 2ga9A 297 56.05 c.66.1.25 134885 2j7zA 68 56.54 d.9.1.1 138131 1txdA 385 57.19 a.87.1.1,b.55.1.1 107422,107423 1upqA 123 58.22 b.55.1.1 113392 1btkA 169 60.24 b.55.1.1 26959 1z4eA 153 60.81 d.108.1.1 124431 1rlrA 761 62.45 a.98.1.1,c.7.1.2 18753,30679 1a8d 452 64.07 2r1iA 172 65.81 2h3gX 268 66.23 2ci9A 102 67.73 1mai 131 69.15 1f9rA 70 69.97 d.9.1.1 90484 2dxqA 150 70.28 2nxwA 565 70.77 2bwfA 77 70.99 d.15.1.1 129363 1sgvA 316 72.08 b.122.1.1,d.265.1.2 98858,98859 3il8A 72 72.45 d.9.1.1 37356 1o7zA 77 73.06 d.9.1.1 86660 1vmkA 277 75.58 c.56.2.1 113680 1c8cA 64 75.71 b.34.13.1 59084 1a8dA 452 76.76 b.29.1.6,b.42.4.2 24262,25607 1maiA 131 78.04 b.55.1.1 26951 1yfuA 174 79.99 b.82.1.20 123094 2oklA 185 80.63 2q2rA 373 80.76 1yqbA 100 81.06 d.15.1.1 123876 1u7zA 226 81.13 c.72.3.1 113107 1lvlA 458 81.80 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1yqzA 438 83.41 1wgrA 100 84.93 d.15.1.5 114621 1vpt 348 85.78 1v70A 105 86.06 b.82.1.9 113555 1lm4A 194 86.30 d.167.1.1 84626 2nptB 100 87.50 d.15.2.2 138449 1kz7A 353 88.01 a.87.1.1,b.55.1.1 73333,73334 1wmhB 86 88.69 d.15.2.2 114745 2qytA 317 88.69