# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	8.77e-15		
2cayA	145	0.3553	b.55.1.12	130167
2r19A	159	4.478		
2hthB	140	7.490	b.55.1.12	136743
1zsqA	528	16.88	b.55.1.8,c.45.1.3	125616,125617
1jr7A	311	18.51	b.82.2.3	63255
1lw3A	657	19.50	b.55.1.8,c.45.1.3	91152,91153
1px5A	349	21.27	a.160.1.2,d.218.1.6	95277,95278
2gclA	261	26.45	b.55.1.10	134991
1nx8A	273	27.98	b.82.2.8	86374
3d3aA	612	31.42		
2e70A	71	32.72		
2yzsA	315	34.59		
1lt3A	240	34.59	d.166.1.1	42230
1qexA	288	39.98	b.32.1.1	24425
2djaA	84	42.92		
2fckA	181	44.06	d.108.1.1	133272
1o6gA	710	48.08	b.69.7.1,c.69.1.4	81087,81088
2hxdA	204	50.19		
1ltsA	185	50.41	d.166.1.1	42229
2h1cA	139	50.88	c.120.1.1	135944
1oihA	301	51.78	b.82.2.5	93051
1xrjA	261	51.98	c.37.1.6	122256
1y0nA	78	55.44	d.291.1.1	116305
1t3yA	141	55.50	d.109.1.2	119141
1lniA	96	67.32	d.1.1.2	74046
1ru4A	400	75.28	b.80.1.9	97836
2al6A	375	81.12	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
1rgeA	96	82.11	d.1.1.2	36028
1pkhA	204	83.38	b.85.4.1	94832
2o6lA	170	83.75		
1ef1A	294	85.34	a.11.2.1,b.55.1.5,d.15.1.4	16368,27003,37611
2fsxA	148	85.35		
2anuA	255	85.77	c.6.3.1	127058
1x67A	146	86.37		
1vfqA	143	87.07	d.109.1.2	120054
1hqz1	141	87.50		
1bco	327	87.65