# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.23e-16		
2cayA	145	0.1482	b.55.1.12	130167
2r19A	159	2.368		
2hthB	140	3.351	b.55.1.12	136743
1lw3A	657	5.851	b.55.1.8,c.45.1.3	91152,91153
2gclA	261	10.49	b.55.1.10	134991
1zsqA	528	10.74	b.55.1.8,c.45.1.3	125616,125617
3d3aA	612	13.08		
1jr7A	311	15.39	b.82.2.3	63255
1o6gA	710	18.20	b.69.7.1,c.69.1.4	81087,81088
1nx8A	273	19.61	b.82.2.8	86374
2al6A	375	19.76	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
1lt3A	240	19.88	d.166.1.1	42230
1oihA	301	30.40	b.82.2.5	93051
1ltsA	185	34.41	d.166.1.1	42229
1xrjA	261	34.66	c.37.1.6	122256
1px5A	349	36.24	a.160.1.2,d.218.1.6	95277,95278
2h7dA	101	40.18		
2fsxA	148	42.11		
1ef1A	294	42.89	a.11.2.1,b.55.1.5,d.15.1.4	16368,27003,37611
2ga9D	469	48.48		
2hxdA	204	49.83		
2djaA	84	49.98		
1t3yA	141	53.11	d.109.1.2	119141
1lniA	96	55.60	d.1.1.2	74046
2fckA	181	59.44	d.108.1.1	133272
1vfqA	143	61.83	d.109.1.2	120054
2h1cA	139	63.04	c.120.1.1	135944
2e70A	71	65.94		
1sgvA	316	67.69	b.122.1.1,d.265.1.2	98858,98859
1qexA	288	68.48	b.32.1.1	24425
1nc7A	138	70.41	b.123.1.1	85549
2anuA	255	71.46	c.6.3.1	127058
1jmmA	377	71.50	b.30.6.1	71749
2iiaA	131	72.85		
2yzsA	315	73.04		
1x6vA	630	74.10	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
2v76A	107	77.32		
2q8uA	336	84.29		
1lm6A	215	84.31	d.167.1.1	84628
2vacA	134	86.49		
1pkhA	204	86.79	b.85.4.1	94832
1rgeA	96	87.18	d.1.1.2	36028
2gj3A	120	89.90