# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.17e-14		
2cayA	145	0.1563	b.55.1.12	130167
2r19A	159	3.603		
1jr7A	311	5.389	b.82.2.3	63255
2hthB	140	5.628	b.55.1.12	136743
2gclA	261	7.267	b.55.1.10	134991
1nx8A	273	10.01	b.82.2.8	86374
1zsqA	528	10.04	b.55.1.8,c.45.1.3	125616,125617
1o6gA	710	11.55	b.69.7.1,c.69.1.4	81087,81088
1rgeA	96	11.83	d.1.1.2	36028
1lniA	96	14.72	d.1.1.2	74046
1xrjA	261	14.74	c.37.1.6	122256
1oihA	301	14.89	b.82.2.5	93051
1lw3A	657	15.85	b.55.1.8,c.45.1.3	91152,91153
1lt3A	240	16.78	d.166.1.1	42230
1ru4A	400	19.14	b.80.1.9	97836
1y0nA	78	21.15	d.291.1.1	116305
1ltsA	185	22.76	d.166.1.1	42229
1bco	327	27.63		
1v73A	342	30.20		
2b5nA	323	31.07		
2al6A	375	35.43	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
1mgrA	99	40.28	d.1.1.2	79106
2ei9A	240	43.60		
2yzsA	315	45.71		
1ef1A	294	48.96	a.11.2.1,b.55.1.5,d.15.1.4	16368,27003,37611
2e11A	266	49.47		
2q82A	129	53.05		
1n13B	113	53.40		
1knmA	130	55.48	b.42.2.1	72781
2djaA	84	56.53		
1f37A	110	58.94	c.47.1.11	33088
1wspA	84	59.38		
1mh1	186	59.85		
2fsxA	148	59.92		
3c25A	383	63.00		
1tl2A	236	63.93	b.67.1.1	27541
2fckA	181	64.02	d.108.1.1	133272
2o6lA	170	65.90		
1pylA	97	68.19	d.1.1.2	104391
2p5iA	288	69.12		
2uubE	162	70.63	d.14.1.1,d.50.1.2	139936,139937
2hxdA	204	74.08		
1guiA	155	74.57	b.18.1.14	76351
1ms9A	648	76.55	b.29.1.15,b.68.1.1	85088,85089
1qexA	288	77.00	b.32.1.1	24425
1m2dA	110	77.33	c.47.1.11	78476
2gj3A	120	79.35		
1px5A	349	82.12	a.160.1.2,d.218.1.6	95277,95278
2aehA	369	83.50	a.11.2.1,b.55.1.5,d.15.1.4	126625,126626,126627
1t3yA	141	84.39	d.109.1.2	119141
2e70A	71	85.26		
1jj2P	95	85.65	b.34.5.1	63101
1pkhA	204	87.25	b.85.4.1	94832