# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	6.91e-16		
2cayA	145	0.2633	b.55.1.12	130167
2r19A	159	2.517		
1jr7A	311	4.765	b.82.2.3	63255
2hthB	140	10.82	b.55.1.12	136743
1px5A	349	13.21	a.160.1.2,d.218.1.6	95277,95278
1nx8A	273	13.37	b.82.2.8	86374
1lw3A	657	13.95	b.55.1.8,c.45.1.3	91152,91153
2ga9D	469	18.99		
2gclA	261	23.95	b.55.1.10	134991
2fsxA	148	26.20		
1zsqA	528	29.26	b.55.1.8,c.45.1.3	125616,125617
1o6gA	710	31.17	b.69.7.1,c.69.1.4	81087,81088
1oihA	301	35.77	b.82.2.5	93051
1ru4A	400	36.62	b.80.1.9	97836
3d3aA	612	37.59		
1vqzA	341	38.59	d.224.1.3,d.104.1.3	120426,120427
2h1cA	139	41.82	c.120.1.1	135944
1xrjA	261	44.99	c.37.1.6	122256
2e70A	71	46.21		
1v73A	342	46.93		
2djaA	84	48.31		
1qexA	288	51.52	b.32.1.1	24425
1lt3A	240	54.65	d.166.1.1	42230
2e11A	266	57.97		
2anuA	255	58.38	c.6.3.1	127058
2h7dA	101	60.74		
2gj3A	120	64.33		
1t3yA	141	65.70	d.109.1.2	119141
2yzsA	315	68.76		
1lniA	96	71.45	d.1.1.2	74046
1sgvA	316	72.71	b.122.1.1,d.265.1.2	98858,98859
1bco	327	77.24		
1rgeA	96	78.63	d.1.1.2	36028
2vacA	134	84.36		
1y0nA	78	85.89	d.291.1.1	116305
2fckA	181	86.51	d.108.1.1	133272
1vfqA	143	89.66	d.109.1.2	120054