# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.23e-15		
2cayA	145	0.3819	b.55.1.12	130167
2r19A	159	2.771		
1jr7A	311	9.911	b.82.2.3	63255
1nx8A	273	15.69	b.82.2.8	86374
1px5A	349	18.48	a.160.1.2,d.218.1.6	95277,95278
2gclA	261	18.80	b.55.1.10	134991
2hthB	140	19.40	b.55.1.12	136743
1lw3A	657	19.67	b.55.1.8,c.45.1.3	91152,91153
1zsqA	528	23.48	b.55.1.8,c.45.1.3	125616,125617
2fsxA	148	28.76		
2ga9D	469	36.48		
2h1cA	139	37.45	c.120.1.1	135944
2e11A	266	39.18		
1vqzA	341	40.28	d.224.1.3,d.104.1.3	120426,120427
1oihA	301	43.38	b.82.2.5	93051
1ru4A	400	48.08	b.80.1.9	97836
1o6gA	710	48.78	b.69.7.1,c.69.1.4	81087,81088
1lniA	96	49.65	d.1.1.2	74046
2gj3A	120	50.45		
2e70A	71	53.72		
1rgeA	96	53.72	d.1.1.2	36028
1sgvA	316	56.79	b.122.1.1,d.265.1.2	98858,98859
2djaA	84	57.23		
1xrjA	261	57.51	c.37.1.6	122256
1v73A	342	60.80		
1qexA	288	61.38	b.32.1.1	24425
1t3yA	141	62.67	d.109.1.2	119141
3d3aA	612	64.98		
1lt3A	240	66.10	d.166.1.1	42230
2anuA	255	68.83	c.6.3.1	127058
1vfqA	143	71.43	d.109.1.2	120054
2oeeA	117	73.91		
2yzsA	315	73.95		
2h7dA	101	84.43		
1bco	327	87.81		
1a3aA	148	88.85	d.112.1.1	40917
1lm6A	215	89.11	d.167.1.1	84628