# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	8.97e-17		
2cayA	145	0.09363	b.55.1.12	130167
2hthB	140	1.771	b.55.1.12	136743
1jr7A	311	1.773	b.82.2.3	63255
1nx8A	273	2.285	b.82.2.8	86374
1oihA	301	4.495	b.82.2.5	93051
2r19A	159	7.356		
2fckA	181	15.99	d.108.1.1	133272
1a3aA	148	18.95	d.112.1.1	40917
1t3yA	141	20.86	d.109.1.2	119141
3c25A	383	24.27		
1zsqA	528	30.20	b.55.1.8,c.45.1.3	125616,125617
1vfqA	143	31.18	d.109.1.2	120054
2b5nA	323	34.24		
1swxA	209	44.16	a.224.1.1	106075
1vqzA	341	45.40	d.224.1.3,d.104.1.3	120426,120427
1h4uA	265	46.77	d.22.1.2,g.3.11.5	60622,60623
1g4fA	86	47.73	g.18.1.1	44873
2o6lA	170	49.45		
2dbhA	102	51.11		
3bvrA	383	51.16		
1opd	85	57.18		
1y0nA	78	59.38	d.291.1.1	116305
2jbhA	225	60.58		
1xrjA	261	65.22	c.37.1.6	122256
1px5A	349	68.83	a.160.1.2,d.218.1.6	95277,95278
1nbwA	607	69.12	c.8.6.1,c.55.1.6,c.55.1.6	80393,80394,80395
1lw3A	657	69.81	b.55.1.8,c.45.1.3	91152,91153
1udmA	149	70.38	d.109.1.2	107780
1r0pA	312	72.26	d.144.1.7	96734
2hxdA	204	77.24		
1ollA	188	77.58	b.1.1.4,b.1.1.4	93313,93314
1eysH	259	78.17	b.41.1.1,f.23.10.1	25484,43517
1wh8A	111	80.08	a.35.1.7	114636
1ucpA	91	81.79	a.77.1.5	99186
1a6jA	163	83.36	d.112.1.1	40915
2anuA	255	83.69	c.6.3.1	127058
2bwfA	77	86.46	d.15.1.1	129363
1y51A	88	87.99		
1jpaA	312	89.41	d.144.1.7	67011
1rznA	205	89.43	c.52.1.28	111981