# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	1.46e-15		
2cayA	145	0.2358	b.55.1.12	130167
2r19A	159	6.521		
1lw3A	657	13.54	b.55.1.8,c.45.1.3	91152,91153
2hthB	140	13.54	b.55.1.12	136743
2gclA	261	15.20	b.55.1.10	134991
1zsqA	528	15.23	b.55.1.8,c.45.1.3	125616,125617
1jr7A	311	16.95	b.82.2.3	63255
1px5A	349	23.52	a.160.1.2,d.218.1.6	95277,95278
2ga9D	469	26.98		
2fsxA	148	28.30		
1lt3A	240	32.65	d.166.1.1	42230
2h1cA	139	37.54	c.120.1.1	135944
1nx8A	273	38.31	b.82.2.8	86374
1lniA	96	40.15	d.1.1.2	74046
2e11A	266	44.07		
2e70A	71	45.09		
1ltsA	185	47.84	d.166.1.1	42229
2gj3A	120	49.56		
2djaA	84	51.44		
1qexA	288	53.20	b.32.1.1	24425
1rgeA	96	54.05	d.1.1.2	36028
1vqzA	341	55.24	d.224.1.3,d.104.1.3	120426,120427
2al6A	375	59.38	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
2h7dA	101	61.02		
2oeeA	117	66.50		
1guiA	155	66.80	b.18.1.14	76351
1o6gA	710	68.37	b.69.7.1,c.69.1.4	81087,81088
1ru4A	400	69.64	b.80.1.9	97836
2anuA	255	70.71	c.6.3.1	127058
1pylA	97	72.71	d.1.1.2	104391
1bco	327	79.18		
3d3aA	612	79.55		
2b5nA	323	81.83		
1xrjA	261	86.08	c.37.1.6	122256
1v73A	342	86.90