# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b77A 193 1.62e-15 1px5A 349 0.2532 a.160.1.2,d.218.1.6 95277,95278 2cayA 145 0.5538 b.55.1.12 130167 1lniA 96 1.877 d.1.1.2 74046 1dfaA 454 4.243 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2c4mA 796 5.680 2yzsA 315 6.064 1xsjA 778 6.614 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1xvjA 109 6.749 2c5uA 375 6.993 1g6aA 271 8.820 e.3.1.1 42704 1jmmA 377 8.850 b.30.6.1 71749 1epwA 1290 8.859 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2abbA 364 9.023 c.1.4.1 126517 2hthB 140 9.315 b.55.1.12 136743 2g9zA 348 9.764 2egvA 229 9.911 1c96A 753 10.52 c.8.2.1,c.83.1.1 30727,35403 1bifA 469 10.56 c.37.1.7,c.60.1.4 31961,34003 4cpvA 108 10.82 a.39.1.4 17198 1ig8A 486 10.98 c.55.1.3,c.55.1.3 64746,64747 2eceA 462 11.17 1nynA 131 11.71 d.235.1.1 86410 2gclA 261 11.90 b.55.1.10 134991 2e9xC 219 16.20 2imqX 282 17.34 1rroA 108 17.64 a.39.1.4 17195 1tltA 319 17.68 c.2.1.3,d.81.1.5 107135,107136 2gupA 292 18.68 c.55.1.10,c.55.1.10 135744,135745 1a41 234 19.81 1rx0A 393 19.81 a.29.3.1,e.6.1.1 98007,98008 1sc6A 404 22.23 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1h6dA 433 23.13 c.2.1.3,d.81.1.5 65656,65657 5palA 109 24.23 a.39.1.4 17215 1mrgA 263 24.28 d.165.1.1 42183 2d29A 387 26.38 a.29.3.1,e.6.1.1 131157,131158 2ts1 419 27.53 3comA 314 27.57 2r3iA 298 27.97 2ap1A 327 31.25 c.55.1.10,c.55.1.10 127108,127109 1kutA 230 32.05 d.143.1.1 73017 2qiyA 154 32.26 2yxoA 267 32.75 2nq5A 755 33.20 2hpuA 175 33.41 1nx8A 273 33.48 b.82.2.8 86374 2bm0A 691 34.30 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1zcbA 362 36.17 a.66.1.1,c.37.1.8 124901,124902 1y0zA 330 36.31 b.82.2.8 116317 1euwA 152 36.67 b.85.4.1 28349 1jr7A 311 37.98 b.82.2.3 63255 1ecrA 309 38.96 e.2.1.1 42678 2pg0A 385 40.76 2yzqA 282 41.56 1h4uA 265 41.63 d.22.1.2,g.3.11.5 60622,60623 2ho3A 325 42.19 2glxA 332 42.68 2pnfA 248 43.30 1vyrA 364 44.71 c.1.4.1 108906 2gdnA 267 45.35 2aaa 484 46.07 2i0kA 561 46.54 2dkfA 431 47.42 1sgvA 316 47.74 b.122.1.1,d.265.1.2 98858,98859 2b5nA 323 48.47 1vjtA 483 49.91 c.2.1.5,d.162.1.2 100833,100834 1oroA 213 50.86 c.61.1.1 34093 1qqcA 773 51.40 c.55.3.5,e.8.1.1 33724,43013 1qexA 288 52.03 b.32.1.1 24425 1r9dA 787 52.66 c.7.1.1 104865 1pylA 97 53.01 d.1.1.2 104391 2hhjA 267 53.33 c.60.1.1 136497 1j9qA 341 53.60 b.6.1.3,b.6.1.3 62765,62766 1zjkA 403 54.54 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1qhfA 240 55.28 c.60.1.1 33960 2gj3A 120 57.67 2jamA 304 58.59 2odsA 265 58.70 1o7eA 276 59.16 e.3.1.1 92622 2q4aA 330 59.41 b.82.2.8 139839 2vadA 223 60.45 1a41A 234 60.56 d.163.1.2 42174 1yf3A 259 61.19 c.66.1.28 123046 2aukA 190 62.41 1wu4A 396 63.43 a.102.1.2 121272 1q0sA 259 65.02 c.66.1.28 95509 2aaaA 484 67.67 b.71.1.1,c.1.8.1 27777,28764 1fnoA 417 68.40 d.58.19.1,c.56.5.4 70145,75841 3c10A 423 70.14 2hbtA 247 70.48 1tl2A 236 70.67 b.67.1.1 27541 2e70A 71 73.71 1lm7A 248 73.73 d.211.2.1 74031 1uh5A 329 74.91 c.2.1.2 107840 1gp1A 198 76.56 c.47.1.10 33059 1s5pA 235 77.86 c.31.1.5 98569 1rl4A 188 79.40 d.167.1.1 97636 1v5vA 401 79.69 b.44.2.1,d.250.1.1 113539,113540 1ntyA 311 82.36 a.87.1.1,b.55.1.1 103873,103874 1tyvA 554 82.41 b.80.1.6 28038 1wpoA 256 82.66 b.57.1.1 27012 1dbhA 354 84.37 a.87.1.1,b.55.1.1 18514,26967 2dg1A 333 85.01 b.68.6.1 131493 2oeeA 117 86.44 1fjgE 162 87.58 d.14.1.1,d.50.1.2 37553,38789 1rgeA 96 88.67 d.1.1.2 36028