# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	6.05e-16		
2cayA	145	0.2580	b.55.1.12	130167
2r19A	159	5.226		
1jr7A	311	8.997	b.82.2.3	63255
1lw3A	657	19.72	b.55.1.8,c.45.1.3	91152,91153
2hthB	140	19.78	b.55.1.12	136743
2gclA	261	20.78	b.55.1.10	134991
1zsqA	528	22.63	b.55.1.8,c.45.1.3	125616,125617
2fsxA	148	23.26		
2anuA	255	27.80	c.6.3.1	127058
1nx8A	273	28.55	b.82.2.8	86374
2gj3A	120	30.03		
2e70A	71	32.36		
1o6gA	710	38.94	b.69.7.1,c.69.1.4	81087,81088
2h1cA	139	41.58	c.120.1.1	135944
2e11A	266	43.01		
1lt3A	240	43.23	d.166.1.1	42230
1lniA	96	44.24	d.1.1.2	74046
1sgvA	316	47.14	b.122.1.1,d.265.1.2	98858,98859
1px5A	349	47.75	a.160.1.2,d.218.1.6	95277,95278
2djaA	84	47.77		
2oeeA	117	51.77		
1ltsA	185	53.05	d.166.1.1	42229
1qexA	288	60.79	b.32.1.1	24425
1rgeA	96	61.25	d.1.1.2	36028
1v8aA	265	65.26	c.72.1.2	100494
1a3aA	148	65.50	d.112.1.1	40917
2h7dA	101	66.84		
2ga9D	469	67.79		
1oihA	301	74.79	b.82.2.5	93051
1xerA	103	79.18	d.58.1.3	38990
1h4uA	265	80.12	d.22.1.2,g.3.11.5	60622,60623
1ef1A	294	83.24	a.11.2.1,b.55.1.5,d.15.1.4	16368,27003,37611
2hxdA	204	83.73		
1pylA	97	87.15	d.1.1.2	104391
1t3yA	141	89.63	d.109.1.2	119141