# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	5.55e-15		
2cayA	145	0.5121	b.55.1.12	130167
2r19A	159	3.056		
1jr7A	311	15.01	b.82.2.3	63255
2gclA	261	16.08	b.55.1.10	134991
2hthB	140	16.90	b.55.1.12	136743
2fsxA	148	27.01		
1nx8A	273	27.24	b.82.2.8	86374
1lt3A	240	36.85	d.166.1.1	42230
1zsqA	528	36.95	b.55.1.8,c.45.1.3	125616,125617
2djaA	84	36.95		
1ru4A	400	42.20	b.80.1.9	97836
1px5A	349	43.85	a.160.1.2,d.218.1.6	95277,95278
2h1cA	139	47.25	c.120.1.1	135944
1xrjA	261	47.91	c.37.1.6	122256
2gj3A	120	48.78		
1lniA	96	50.85	d.1.1.2	74046
1ltsA	185	55.44	d.166.1.1	42229
1qexA	288	56.79	b.32.1.1	24425
1o6gA	710	57.23	b.69.7.1,c.69.1.4	81087,81088
1oihA	301	61.49	b.82.2.5	93051
2anuA	255	61.65	c.6.3.1	127058
1rgeA	96	62.82	d.1.1.2	36028
1lw3A	657	63.59	b.55.1.8,c.45.1.3	91152,91153
1a3aA	148	69.64	d.112.1.1	40917
2yzsA	315	77.78		
1v73A	342	79.06		
2e70A	71	81.33		
2oeeA	117	84.16		
1bco	327	84.74		
1v9sA	208	87.75	c.61.1.1	119894