# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	7.91e-16		
2cayA	145	0.2527	b.55.1.12	130167
2r19A	159	3.019		
1lw3A	657	12.30	b.55.1.8,c.45.1.3	91152,91153
1jr7A	311	12.81	b.82.2.3	63255
2hthB	140	12.86	b.55.1.12	136743
1zsqA	528	14.68	b.55.1.8,c.45.1.3	125616,125617
1ru4A	400	15.46	b.80.1.9	97836
1nx8A	273	16.27	b.82.2.8	86374
2gclA	261	19.95	b.55.1.10	134991
1vqzA	341	24.61	d.224.1.3,d.104.1.3	120426,120427
1px5A	349	26.65	a.160.1.2,d.218.1.6	95277,95278
2fsxA	148	27.61		
1oihA	301	27.69	b.82.2.5	93051
1lt3A	240	30.83	d.166.1.1	42230
1lniA	96	36.09	d.1.1.2	74046
1ltsA	185	37.87	d.166.1.1	42229
1rgeA	96	38.71	d.1.1.2	36028
2djaA	84	42.70		
1qexA	288	46.72	b.32.1.1	24425
1h4uA	265	48.08	d.22.1.2,g.3.11.5	60622,60623
2e11A	266	52.57		
1t3yA	141	53.54	d.109.1.2	119141
2ga9D	469	54.54		
1o6gA	710	58.17	b.69.7.1,c.69.1.4	81087,81088
2yzsA	315	59.19		
1xrjA	261	60.83	c.37.1.6	122256
2gj3A	120	63.17		
2e70A	71	63.83		
2h7dA	101	64.44		
2h1cA	139	64.84	c.120.1.1	135944
1v73A	342	68.06		
2anuA	255	75.05	c.6.3.1	127058
1guiA	155	79.32	b.18.1.14	76351
1sgvA	316	83.43	b.122.1.1,d.265.1.2	98858,98859
1wspA	84	86.15		
1vfqA	143	87.77	d.109.1.2	120054
3d3aA	612	89.11