# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	3.43e-12		
2cayA	145	0.5828	b.55.1.12	130167
1jr7A	311	4.190	b.82.2.3	63255
1nx8A	273	4.446	b.82.2.8	86374
2r19A	159	13.21		
2hthB	140	13.35	b.55.1.12	136743
1oihA	301	18.44	b.82.2.5	93051
1vqzA	341	25.17	d.224.1.3,d.104.1.3	120426,120427
1vfqA	143	48.56	d.109.1.2	120054
2fckA	181	49.77	d.108.1.1	133272
1t3yA	141	54.89	d.109.1.2	119141
1yycA	174	54.91		
1o6gA	710	60.44	b.69.7.1,c.69.1.4	81087,81088
1lw3A	657	64.99	b.55.1.8,c.45.1.3	91152,91153
1px5A	349	71.21	a.160.1.2,d.218.1.6	95277,95278
1ollA	188	74.18	b.1.1.4,b.1.1.4	93313,93314
2anuA	255	77.61	c.6.3.1	127058
1ru4A	400	79.30	b.80.1.9	97836
2i3fA	224	86.76		
2jbhA	225	88.14		
1bkjA	240	88.60	d.90.1.1	40243