# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	4.74e-13		
2cayA	145	0.1937	b.55.1.12	130167
2hthB	140	1.976	b.55.1.12	136743
1nx8A	273	3.117	b.82.2.8	86374
1jr7A	311	3.593	b.82.2.3	63255
1oihA	301	5.707	b.82.2.5	93051
2r19A	159	12.66		
1px5A	349	27.02	a.160.1.2,d.218.1.6	95277,95278
2fsxA	148	28.28		
1guiA	155	31.32	b.18.1.14	76351
1o6gA	710	38.25	b.69.7.1,c.69.1.4	81087,81088
1lw3A	657	40.76	b.55.1.8,c.45.1.3	91152,91153
2oq2A	261	46.12		
1zsqA	528	47.72	b.55.1.8,c.45.1.3	125616,125617
1vqzA	341	65.50	d.224.1.3,d.104.1.3	120426,120427
1xrjA	261	69.75	c.37.1.6	122256
3bp8C	75	70.37		
2h1cA	139	71.66	c.120.1.1	135944
1y0nA	78	74.75	d.291.1.1	116305
2anuA	255	82.58	c.6.3.1	127058
2cx7A	130	83.50		
1y0zA	330	84.21	b.82.2.8	116317
2ppqA	322	85.16		
2hb5A	164	88.79		
2ig7A	401	88.88